| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08260 | 3:2,259,582-2,262,525 | + | C2H3g06828 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C1H3g20268 | 3:2,263,976-2,264,901 | - | C2H3g21623 | CX3g028017 | - | - | - | Detail |
| C1H3g29909 | 3:2,265,126-2,270,153 | + | C2H3g05886 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C1H3g25012 | 3:2,274,096-2,275,920 | - | C2H3g28085 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C1H3g19868 | 3:2,280,784-2,281,256 | + | C2H3g09242 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C1H3g27335 | 3:2,285,142-2,289,430 | + | C2H3g13895 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C1H3g02545 | 3:2,292,095-2,292,415 | + | C2H3g14044 | CX3g026084 | - | - | - | Detail |
| C1H3g29062 | 3:2,292,424-2,294,517 | + | C2H3g11885 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C1H3g17015 | 3:2,295,444-2,316,133 | + | C2H3g15286 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C1H3g05189 | 3:2,330,831-2,331,278 | - | - | - | - | - | - | Detail |
| C1H3g30836 | 3:2,336,655-2,347,097 | - | C2H3g18202 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C1H3g06760 | 3:2,356,866-2,361,842 | - | C2H3g23117 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C1H3g11420 | 3:2,362,605-2,364,829 | + | C2H3g11846 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C1H3g01679 | 3:2,365,435-2,366,677 | - | C2H3g18230 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C1H3g05732 | 3:2,375,010-2,376,066 | - | C2H3g10578 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C1H3g20087 | 3:2,378,263-2,379,597 | - | C2H3g08315 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C1H3g24625 | 3:2,386,225-2,389,760 | + | C2H3g07329 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C1H3g03956 | 3:2,393,000-2,395,698 | - | C2H3g09418 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C1H3g20130 | 3:2,402,864-2,403,494 | + | C2H3g30161 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C1H3g20743 | 3:2,406,487-2,407,344 | - | C2H3g15126 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g23472 | 3:13,488,878-13,491,031 | - | C1H3g01567 | - | LOC_Os03g26791 | Os03g0385301 | - | Detail |
| C2H3g04342 | 3:13,494,165-13,494,916 | + | C1H3g30590 | CX3g027750 | LOC_Os03g26820 | Os03g0385400 | - | Detail |
| C2H3g13722 | 3:13,498,110-13,500,533 | + | C1H3g30590 | CX3g027750 | LOC_Os03g26820 | Os03g0385400 | - | Detail |
| C2H3g05960 | 3:13,514,899-13,516,145 | - | C1H3g25255 | CX3g028822 | LOC_Os03g26860 | Os03g0385900 | - | Detail |
| C2H3g18357 | 3:13,520,855-13,526,312 | + | C1H3g24605 | CX3g027474 | LOC_Os03g26870 | Os03g0386000 | SRWD5, SRWD5, OsWD40-73 | Detail |
| C2H3g30684 | 3:13,526,650-13,527,163 | - | C1H3g14788 | CX3g028061 | LOC_Os02g24750 | Os03g0562000 | - | Detail |
| C2H3g21328 | 3:13,529,872-13,531,736 | - | C1H3g29954 | CX3g026750 | - | - | - | Detail |
| C2H3g25176 | 3:13,591,952-13,594,378 | + | C1H3g27294 | CX3g027835 | LOC_Os03g26910 | Os03g0386500 | - | Detail |
| C2H3g11441 | 3:13,609,975-13,612,351 | + | C1H3g19318 | CX3g024963 | LOC_Os03g26920 | Os03g0386700 | - | Detail |
| C2H3g16874 | 3:13,615,251-13,618,104 | + | C1H3g12347 | CX3g024963 | LOC_Os03g26930 | Os03g0386800 | - | Detail |
| C2H3g12157 | 3:13,629,150-13,638,501 | + | C1H3g25240 | CX3g030527 | LOC_Os03g26960 | Os03g0387000 | OsDNA2_2 | Detail |
| C2H3g05360 | 3:13,639,657-13,644,369 | + | C1H3g24830 | CX3g026325 | LOC_Os03g26970 | Os03g0387100 | TT1, OsPAB1, PAB1, OsTT1 | Detail |
| C2H3g15032 | 3:13,678,496-13,680,812 | + | C1H3g00426 | CX3g025602 | LOC_Os03g27010 | Os03g0387800 | - | Detail |
| C2H3g04609 | 3:13,688,133-13,690,891 | - | - | CX5g039361 | - | - | - | Detail |
| C2H3g04924 | 3:13,696,106-13,702,078 | + | C1H3g07066 | CX3g030395 | LOC_Os03g27019 | Os03g0387900 | - | Detail |
| C2H3g03183 | 3:13,704,052-13,706,460 | - | C1H3g24480 | CX3g026341 | LOC_Os03g27030 | Os03g0388000 | - | Detail |
| C2H3g20630 | 3:13,708,132-13,709,434 | - | C1H3g21976 | CX3g027742 | LOC_Os03g27040 | Os03g0388100 | - | Detail |
| C2H3g29219 | 3:13,726,053-13,738,286 | + | C1H3g00293 | CX3g030335 | LOC_Os03g27080 | Os03g0388500 | - | Detail |
| C2H3g29965 | 3:13,743,135-13,744,482 | - | C1H3g09239 | CX3g028996 | LOC_Os03g27090 | Os03g0388600 | Os2R_MYB38 | Detail |
| C2H3g12804 | 3:13,757,085-13,758,821 | + | C1H3g24884 | CX3g027644 | LOC_Os03g27110 | Os03g0388800 | OsSG34 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |