| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08260 | 3:2,259,582-2,262,525 | + | C2H3g06828 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C1H3g20268 | 3:2,263,976-2,264,901 | - | C2H3g21623 | CX3g028017 | - | - | - | Detail |
| C1H3g29909 | 3:2,265,126-2,270,153 | + | C2H3g05886 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C1H3g25012 | 3:2,274,096-2,275,920 | - | C2H3g28085 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C1H3g19868 | 3:2,280,784-2,281,256 | + | C2H3g09242 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C1H3g27335 | 3:2,285,142-2,289,430 | + | C2H3g13895 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C1H3g02545 | 3:2,292,095-2,292,415 | + | C2H3g14044 | CX3g026084 | - | - | - | Detail |
| C1H3g29062 | 3:2,292,424-2,294,517 | + | C2H3g11885 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C1H3g17015 | 3:2,295,444-2,316,133 | + | C2H3g15286 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C1H3g05189 | 3:2,330,831-2,331,278 | - | - | - | - | - | - | Detail |
| C1H3g30836 | 3:2,336,655-2,347,097 | - | C2H3g18202 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C1H3g06760 | 3:2,356,866-2,361,842 | - | C2H3g23117 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C1H3g11420 | 3:2,362,605-2,364,829 | + | C2H3g11846 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C1H3g01679 | 3:2,365,435-2,366,677 | - | C2H3g18230 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C1H3g05732 | 3:2,375,010-2,376,066 | - | C2H3g10578 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C1H3g20087 | 3:2,378,263-2,379,597 | - | C2H3g08315 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C1H3g24625 | 3:2,386,225-2,389,760 | + | C2H3g07329 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C1H3g03956 | 3:2,393,000-2,395,698 | - | C2H3g09418 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C1H3g20130 | 3:2,402,864-2,403,494 | + | C2H3g30161 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C1H3g20743 | 3:2,406,487-2,407,344 | - | C2H3g15126 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g14461 | 2:27,983,381-27,985,425 | - | C1H2g00972 | CX2g020051 | LOC_Os02g49880 | Os02g0731700 | OsK, Ghd2 | Detail |
| C2H2g05011 | 2:28,001,819-28,003,276 | + | C1H2g08007 | CX2g023216 | LOC_Os02g49920 | Os02g0731900 | OsCUT2 | Detail |
| C2H2g12585 | 2:28,009,364-28,013,958 | + | C1H2g22578 | CX2g022879 | LOC_Os02g49950 | Os02g0732200 | - | Detail |
| C2H2g26422 | 2:28,016,168-28,017,969 | + | C1H2g08019 | - | LOC_Os02g49960 | Os02g0732300 | - | Detail |
| C2H2g20922 | 2:28,025,782-28,026,672 | + | C1H2g28110 | CX2g019464 | LOC_Os02g49970 | Os02g0732400 | - | Detail |
| C2H2g17194 | 2:28,029,944-28,033,017 | - | C1H2g10850 | CX2g023132 | LOC_Os02g49980 | Os02g0732500 | - | Detail |
| C2H2g26612 | 2:28,036,294-28,037,331 | - | C1H2g05502 | CX2g021353 | LOC_Os02g49986 | Os02g0732600 | Os2R_MYB30 | Detail |
| C2H2g25135 | 2:28,038,484-28,050,004 | - | C1H2g24742 | CX2g020946 | LOC_Os02g49992 | Os02g0732700 | - | Detail |
| C2H2g26888 | 2:28,050,947-28,052,542 | - | C1H2g27424 | CX2g023389 | LOC_Os02g50000 | Os02g0732800 | - | Detail |
| C2H2g07391 | 2:28,053,843-28,057,196 | + | C1H2g26386 | CX2g020808 | LOC_Os02g50010 | Os02g0732900 | - | Detail |
| C2H2g23355 | 2:28,057,447-28,059,601 | - | C1H2g27002 | CX2g019891 | LOC_Os02g50020 | Os02g0733001 | - | Detail |
| C2H2g17859 | 2:28,065,683-28,068,761 | + | C1H2g31248 | CX2g019255 | LOC_Os02g50040 | Os02g0733300 | OsGH9B1 | Detail |
| C2H2g23239 | 2:28,069,133-28,069,789 | - | C1H2g05277 | CX2g024096 | LOC_Os02g50050 | Os02g0733400 | - | Detail |
| C2H2g09796 | 2:28,071,260-28,071,796 | - | C1H2g28250 | CX2g023041 | LOC_Os02g50060 | Os02g0733500 | - | Detail |
| C2H2g06681 | 2:28,073,838-28,074,380 | - | - | - | - | - | - | Detail |
| C2H2g29637 | 2:28,078,545-28,081,151 | + | C1H2g25545 | CX2g024530 | LOC_Os02g50100 | Os02g0733800 | - | Detail |
| C2H2g26091 | 2:28,081,751-28,081,993 | - | - | CX2g020845 | LOC_Os02g50110 | Os02g0733900 | OsSYL2 | Detail |
| C2H2g14181 | 2:28,100,291-28,100,920 | + | C1H2g09486 | CX2g019678 | LOC_Os02g50130 | Os02g0734300 | - | Detail |
| C2H2g24179 | 2:28,113,048-28,114,363 | + | C1H2g30933 | - | LOC_Os02g50140 | Os02g0734400 | - | Detail |
| C2H2g04511 | 2:28,118,219-28,120,246 | + | C1H2g30933 | - | LOC_Os02g50174 | Os02g0734500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |