| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30626 | 3:2,126,677-2,131,266 | - | C2H3g17004 | CX3g028566 | LOC_Os03g04940 | Os03g0143000 | - | Detail |
| C1H3g27298 | 3:2,133,189-2,135,540 | + | C2H3g18870 | CX3g025128 | LOC_Os03g04950 | Os03g0143100 | OsSDD1 | Detail |
| C1H3g02218 | 3:2,142,406-2,146,223 | - | C2H3g00510 | CX3g027250 | LOC_Os03g04960 | Os03g0143300 | - | Detail |
| C1H3g27270 | 3:2,146,929-2,152,087 | - | C2H3g20943 | CX3g029237 | LOC_Os03g04970 | Os03g0143400 | - | Detail |
| C1H3g30154 | 3:2,154,021-2,157,114 | + | C2H3g27834 | CX3g027862 | LOC_Os03g04980 | Os03g0143600 | - | Detail |
| C1H3g31666 | 3:2,159,495-2,163,767 | + | C2H3g13054 | CX3g030942 | LOC_Os03g04990 | Os03g0143700 | - | Detail |
| C1H3g05683 | 3:2,167,324-2,184,216 | + | C2H3g11174 | CX3g030855 | LOC_Os03g05020 | Os03g0143800 | LPL2 | Detail |
| C1H3g03140 | 3:2,184,465-2,185,292 | + | C2H3g25262 | CX3g030717 | LOC_Os03g05030 | Os03g0143900 | - | Detail |
| C1H3g19361 | 3:2,185,482-2,190,326 | - | C2H3g25681 | CX3g027941 | LOC_Os03g05040 | Os03g0144000 | MEICA1 | Detail |
| C1H3g21183 | 3:2,195,368-2,196,882 | + | C2H3g04857 | CX3g030916 | LOC_Os03g05060 | Os03g0144300 | - | Detail |
| C1H3g20447 | 3:2,199,850-2,201,403 | + | C2H3g23961 | CX3g030916 | LOC_Os03g05070 | Os03g0144500 | - | Detail |
| C1H3g09392 | 3:2,206,402-2,207,713 | - | - | CX3g029076 | - | - | - | Detail |
| C1H3g06705 | 3:2,211,729-2,213,543 | + | C2H3g00158 | CX3g030916 | LOC_Os03g05110 | Os03g0144800 | - | Detail |
| C1H3g19955 | 3:2,217,739-2,220,831 | - | C2H3g20075 | CX3g027788 | LOC_Os03g05140 | Os03g0145102 | - | Detail |
| C1H3g20499 | 3:2,229,168-2,229,920 | + | C2H3g29665 | CX3g025772 | LOC_Os03g05160 | Os03g0145200 | - | Detail |
| C1H3g25509 | 3:2,232,644-2,233,273 | + | C2H3g24545 | CX3g030193 | LOC_Os03g16890 | Os03g0692000 | - | Detail |
| C1H3g14347 | 3:2,236,168-2,238,339 | - | C2H3g14474 | CX3g027358 | - | Os03g0363100 | - | Detail |
| C1H3g07337 | 3:2,239,775-2,248,645 | - | C2H3g21503 | CX3g028191 | LOC_Os03g05200 | Os03g0145500 | - | Detail |
| C1H3g27104 | 3:2,251,853-2,253,121 | - | C2H3g25507 | CX3g025781 | LOC_Os03g05210 | Os03g0145600 | - | Detail |
| C1H3g18616 | 3:2,253,915-2,256,229 | - | C2H3g25373 | CX3g029694 | LOC_Os03g05260 | Os03g0145800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g08125 | 1:31,873,086-31,873,306 | - | C1H1g26731 | CX1g003395 | LOC_Os01g62200 | Os01g0839200 | OsDSR2 | Detail |
| C2H1g16708 | 1:31,874,032-31,875,383 | - | C1H1g10232 | CX1g003395 | LOC_Os01g62200 | Os01g0839200 | OsDSR2 | Detail |
| C2H1g22109 | 1:31,877,932-31,879,507 | + | C1H1g15957 | CX1g004020 | LOC_Os01g62210 | Os01g0839300 | - | Detail |
| C2H1g11723 | 1:31,886,878-31,890,436 | - | C1H1g17963 | CX1g000448 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| C2H1g28281 | 1:31,896,293-31,897,036 | - | C1H1g24415 | - | LOC_Os01g62260 | Os01g0839900 | OsOLP1 | Detail |
| C2H1g09224 | 1:31,900,693-31,903,864 | + | C1H1g20143 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C2H1g21773 | 1:31,909,028-31,910,593 | - | C1H1g19514 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C2H1g18215 | 1:31,924,150-31,924,608 | - | C1H1g29893 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C2H1g27558 | 1:31,925,575-31,926,381 | - | C1H1g00377 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C2H1g18392 | 1:31,932,970-31,935,143 | - | C1H1g17139 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C2H1g21625 | 1:31,941,231-31,942,370 | + | C1H1g12130 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C2H1g18206 | 1:31,950,931-31,955,865 | - | C1H1g08278 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C2H1g01645 | 1:31,964,757-31,970,235 | + | C1H1g27442 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C2H1g14112 | 1:31,970,944-31,973,706 | + | C1H1g29013 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C2H1g22797 | 1:31,978,492-31,979,601 | + | C1H1g20425 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C2H1g16312 | 1:31,980,193-31,987,777 | - | C1H1g09787 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C2H1g22514 | 1:31,997,933-32,000,395 | + | C1H1g04968 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C2H1g04788 | 1:32,005,297-32,008,249 | - | C1H1g14751 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C2H1g08845 | 1:32,012,430-32,015,156 | - | C1H1g07793 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C2H1g06756 | 1:32,017,499-32,023,045 | - | C1H1g12370 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |