| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30626 | 3:2,126,677-2,131,266 | - | C2H3g17004 | CX3g028566 | LOC_Os03g04940 | Os03g0143000 | - | Detail |
| C1H3g27298 | 3:2,133,189-2,135,540 | + | C2H3g18870 | CX3g025128 | LOC_Os03g04950 | Os03g0143100 | OsSDD1 | Detail |
| C1H3g02218 | 3:2,142,406-2,146,223 | - | C2H3g00510 | CX3g027250 | LOC_Os03g04960 | Os03g0143300 | - | Detail |
| C1H3g27270 | 3:2,146,929-2,152,087 | - | C2H3g20943 | CX3g029237 | LOC_Os03g04970 | Os03g0143400 | - | Detail |
| C1H3g30154 | 3:2,154,021-2,157,114 | + | C2H3g27834 | CX3g027862 | LOC_Os03g04980 | Os03g0143600 | - | Detail |
| C1H3g31666 | 3:2,159,495-2,163,767 | + | C2H3g13054 | CX3g030942 | LOC_Os03g04990 | Os03g0143700 | - | Detail |
| C1H3g05683 | 3:2,167,324-2,184,216 | + | C2H3g11174 | CX3g030855 | LOC_Os03g05020 | Os03g0143800 | LPL2 | Detail |
| C1H3g03140 | 3:2,184,465-2,185,292 | + | C2H3g25262 | CX3g030717 | LOC_Os03g05030 | Os03g0143900 | - | Detail |
| C1H3g19361 | 3:2,185,482-2,190,326 | - | C2H3g25681 | CX3g027941 | LOC_Os03g05040 | Os03g0144000 | MEICA1 | Detail |
| C1H3g21183 | 3:2,195,368-2,196,882 | + | C2H3g04857 | CX3g030916 | LOC_Os03g05060 | Os03g0144300 | - | Detail |
| C1H3g20447 | 3:2,199,850-2,201,403 | + | C2H3g23961 | CX3g030916 | LOC_Os03g05070 | Os03g0144500 | - | Detail |
| C1H3g09392 | 3:2,206,402-2,207,713 | - | - | CX3g029076 | - | - | - | Detail |
| C1H3g06705 | 3:2,211,729-2,213,543 | + | C2H3g00158 | CX3g030916 | LOC_Os03g05110 | Os03g0144800 | - | Detail |
| C1H3g19955 | 3:2,217,739-2,220,831 | - | C2H3g20075 | CX3g027788 | LOC_Os03g05140 | Os03g0145102 | - | Detail |
| C1H3g20499 | 3:2,229,168-2,229,920 | + | C2H3g29665 | CX3g025772 | LOC_Os03g05160 | Os03g0145200 | - | Detail |
| C1H3g25509 | 3:2,232,644-2,233,273 | + | C2H3g24545 | CX3g030193 | LOC_Os03g16890 | Os03g0692000 | - | Detail |
| C1H3g14347 | 3:2,236,168-2,238,339 | - | C2H3g14474 | CX3g027358 | - | Os03g0363100 | - | Detail |
| C1H3g07337 | 3:2,239,775-2,248,645 | - | C2H3g21503 | CX3g028191 | LOC_Os03g05200 | Os03g0145500 | - | Detail |
| C1H3g27104 | 3:2,251,853-2,253,121 | - | C2H3g25507 | CX3g025781 | LOC_Os03g05210 | Os03g0145600 | - | Detail |
| C1H3g18616 | 3:2,253,915-2,256,229 | - | C2H3g25373 | CX3g029694 | LOC_Os03g05260 | Os03g0145800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g21066 | 8:20,294,440-20,298,567 | + | C1H8g07271 | CX8g054252 | LOC_Os08g37820 | Os08g0484800 | - | Detail |
| C2H8g02429 | 8:20,305,319-20,306,308 | - | - | - | LOC_Os08g37840 | Os08g0485000 | - | Detail |
| C2H8g11309 | 8:20,316,438-20,323,570 | + | C1H8g08354 | CX8g054237 | LOC_Os08g37874 | Os08g0485400 | - | Detail |
| C2H8g09800 | 8:20,327,851-20,328,311 | + | C1H8g24443 | CX8g050461 | LOC_Os08g37890 | Os08g0485500 | RAE2, OsEPFL1, EPFL1, GAD1 | Detail |
| C2H8g22834 | 8:20,331,886-20,337,354 | + | C1H8g08175 | CX8g054267 | LOC_Os08g37904 | Os08g0485600 | - | Detail |
| C2H8g11998 | 8:20,345,869-20,352,164 | + | C1H8g13898 | CX8g053049 | LOC_Os08g37920 | Os08g0485700 | - | Detail |
| C2H8g20917 | 8:20,353,093-20,355,855 | - | C1H8g11808 | CX8g053483 | LOC_Os08g37930 | Os08g0485800 | - | Detail |
| C2H8g01955 | 8:20,357,441-20,360,495 | - | C1H8g21083 | CX8g052013 | LOC_Os08g37940 | Os08g0485900 | - | Detail |
| C2H8g06885 | 8:20,362,408-20,370,645 | + | C1H8g12876 | CX8g054609 | LOC_Os08g37950 | Os08g0486100 | - | Detail |
| C2H8g17660 | 8:20,371,756-20,374,662 | - | C1H8g09919 | CX8g050748 | LOC_Os08g37960 | Os08g0486200 | - | Detail |
| C2H8g28570 | 8:20,383,371-20,384,904 | - | C1H8g05150 | CX8g052173 | LOC_Os08g37970 | Os08g0486300 | Os2R_MYB80 | Detail |
| C2H8g10262 | 8:20,400,922-20,401,419 | + | C1H9g18707 | CX8g052825 | LOC_Os08g37990 | Os08g0486700 | - | Detail |
| C2H8g22845 | 8:20,405,636-20,408,083 | + | C1H8g06962 | CX8g052559 | LOC_Os08g38010 | Os08g0487000 | - | Detail |
| C2H8g02123 | 8:20,410,265-20,410,954 | - | C1H8g07010 | CX8g053523 | LOC_Os08g38020 | Os08g0487100 | - | Detail |
| C2H8g17510 | 8:20,427,743-20,430,762 | - | C1H8g09056 | CX8g053173 | LOC_Os08g38060 | Os08g0487500 | - | Detail |
| C2H8g21912 | 8:20,437,235-20,439,233 | + | C1H8g03415 | CX8g054700 | LOC_Os08g38080 | Os08g0487700 | - | Detail |
| C2H8g01365 | 8:20,440,173-20,444,679 | - | C1H8g23582 | CX8g051291 | LOC_Os08g38086 | Os08g0487800 | - | Detail |
| C2H8g04096 | 8:20,445,612-20,449,097 | - | C1H8g16452 | CX8g051898 | LOC_Os08g38092 | Os08g0487900 | - | Detail |
| C2H8g24896 | 8:20,456,733-20,458,202 | + | C1H8g23496 | CX8g051261 | LOC_Os08g38110 | Os08g0489100 | - | Detail |
| C2H8g03266 | 8:20,466,541-20,467,333 | - | - | CX8g053079 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |