| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g00456 | 3:1,967,721-1,971,367 | - | C2H3g01677 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C1H3g23782 | 3:1,976,614-1,978,122 | + | C2H3g16470 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C1H3g00353 | 3:2,001,135-2,002,661 | + | C2H3g12777 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C1H3g25985 | 3:2,007,851-2,009,407 | + | C2H3g27330 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C1H3g15064 | 3:2,018,583-2,020,202 | + | C2H3g29153 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C1H3g14858 | 3:2,020,878-2,021,432 | - | - | - | - | - | - | Detail |
| C1H3g07260 | 3:2,022,825-2,025,230 | - | C2H3g12329 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C1H3g31769 | 3:2,031,637-2,032,080 | - | C2H3g13203 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C1H3g10738 | 3:2,034,958-2,036,214 | + | C2H3g17473 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C1H3g01474 | 3:2,042,107-2,045,314 | + | C2H3g05277 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C1H3g10114 | 3:2,046,069-2,047,786 | + | C2H3g19470 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C1H3g00645 | 3:2,049,566-2,052,981 | + | C2H3g09892 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C1H3g11848 | 3:2,060,939-2,063,117 | + | C2H3g24267 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C1H3g03155 | 3:2,066,971-2,069,610 | + | C2H3g24637 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C1H3g16077 | 3:2,077,782-2,078,738 | + | C2H3g16825 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C1H3g31558 | 3:2,084,909-2,088,615 | + | C2H3g26010 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C1H3g10254 | 3:2,089,471-2,090,426 | - | C2H3g05143 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C1H3g20384 | 3:2,100,222-2,100,713 | + | C2H5g13982 | - | - | - | - | Detail |
| C1H3g19270 | 3:2,111,362-2,118,089 | + | C2H3g20094 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C1H3g30404 | 3:2,118,729-2,124,248 | - | C2H3g26910 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g09134 | 9:18,283,609-18,284,034 | + | C1H9g19437 | - | LOC_Os09g37490 | Os09g0547000 | - | Detail |
| C2H9g15534 | 9:18,285,220-18,285,654 | + | C1H9g16498 | - | LOC_Os09g37480 | Os09g0546900 | - | Detail |
| C2H9g23012 | 9:18,288,480-18,288,914 | - | C1H9g12140 | - | LOC_Os09g37460 | Os09g0546700 | - | Detail |
| C2H9g06677 | 9:18,291,375-18,291,842 | + | C1H9g15403 | - | LOC_Os09g37344 | Os09g0545400 | - | Detail |
| C2H9g19459 | 9:18,295,893-18,297,499 | + | C1H9g03784 | - | LOC_Os09g37344 | Os09g0545400 | - | Detail |
| C2H9g25494 | 9:18,297,100-18,297,522 | - | C1H9g24888 | - | LOC_Os09g37410 | Os09g0546200 | - | Detail |
| C2H9g30658 | 9:18,299,362-18,299,787 | - | C1H9g13035 | - | LOC_Os09g37400 | Os09g0546100 | OsSAUR45, SAUR45 | Detail |
| C2H9g29596 | 9:18,299,435-18,299,764 | + | C1H9g00230 | - | LOC_Os09g37344 | Os09g0545400 | - | Detail |
| C2H9g11422 | 9:18,301,489-18,301,923 | - | C1H9g16498 | - | LOC_Os09g37394 | Os09g0546900 | - | Detail |
| C2H9g26450 | 9:18,308,574-18,310,420 | + | - | - | - | - | - | Detail |
| C2H9g28228 | 9:18,310,649-18,311,074 | - | C1H9g01293 | - | LOC_Os09g37369 | Os09g0545700 | - | Detail |
| C2H9g13805 | 9:18,310,707-18,313,375 | + | C1H9g15403 | - | LOC_Os09g37360 | Os09g0545650 | - | Detail |
| C2H9g26386 | 9:18,314,076-18,314,498 | - | C1H9g22535 | - | LOC_Os09g37369 | Os09g0545700 | - | Detail |
| C2H9g28207 | 9:18,316,394-18,316,831 | + | C1H9g13292 | - | LOC_Os09g37460 | Os09g0546700 | - | Detail |
| C2H9g28262 | 9:18,320,729-18,321,767 | + | C1H9g13292 | - | LOC_Os09g37460 | Os09g0546700 | - | Detail |
| C2H9g06948 | 9:18,322,895-18,323,353 | + | C1H9g07247 | - | LOC_Os09g37500 | Os09g0547100 | - | Detail |
| C2H9g26899 | 9:18,323,910-18,326,294 | - | C1H9g03915 | CX9g057441 | LOC_Os09g37510 | Os09g0547200 | - | Detail |
| C2H9g03178 | 9:18,346,205-18,352,113 | + | C1H9g15355 | CX9g056795 | LOC_Os09g37520 | Os09g0547300 | - | Detail |
| C2H9g17799 | 9:18,370,871-18,372,500 | + | C1H9g27743 | CX9g054942 | LOC_Os09g37540 | Os09g0547500 | LOGL9 | Detail |
| C2H9g02472 | 9:18,380,328-18,381,499 | + | C1H9g22751 | CX9g055014 | LOC_Os09g37570 | Os09g0547800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |