| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01856 | 3:1,832,864-1,835,212 | - | C2H3g17961 | CX3g031134 | LOC_Os03g04390 | Os03g0136700 | OsPGL3A | Detail |
| C1H3g19390 | 3:1,836,280-1,839,193 | - | C2H3g24395 | CX3g026091 | LOC_Os03g04400 | Os03g0136800 | - | Detail |
| C1H3g26141 | 3:1,840,377-1,847,342 | - | C2H3g13274 | CX3g026194 | LOC_Os03g04410 | Os03g0136900 | - | Detail |
| C1H3g09324 | 3:1,862,774-1,866,202 | + | C2H3g10382 | CX3g025161 | LOC_Os03g04430 | Os03g0137200 | - | Detail |
| C1H3g24578 | 3:1,867,229-1,870,389 | - | C2H3g08269 | CX3g030835 | LOC_Os03g04440 | Os03g0137300 | - | Detail |
| C1H3g23115 | 3:1,872,827-1,880,719 | + | C2H3g22036 | CX3g030190 | LOC_Os03g04450 | Os03g0137400 | - | Detail |
| C1H3g17292 | 3:1,881,481-1,883,028 | + | C2H3g01834 | CX3g030394 | LOC_Os03g04470 | Os03g0137600 | - | Detail |
| C1H3g01548 | 3:1,884,268-1,885,993 | - | C2H3g03162 | CX3g026460 | LOC_Os03g04480 | Os03g0137700 | - | Detail |
| C1H3g28742 | 3:1,896,875-1,897,595 | + | C2H3g00922 | CX3g029178 | LOC_Os03g04490 | Os03g0137800 | KRP5 | Detail |
| C1H3g12595 | 3:1,906,831-1,911,279 | + | C2H3g19333 | CX3g025982 | LOC_Os03g04500 | Os03g0138000 | - | Detail |
| C1H3g07979 | 3:1,912,717-1,921,984 | - | C2H3g17338 | - | - | - | - | Detail |
| C1H3g03175 | 3:1,924,943-1,926,511 | + | C2H3g18481 | CX3g028238 | LOC_Os03g04530 | Os03g0138200 | - | Detail |
| C1H3g14282 | 3:1,929,358-1,929,630 | + | C2H3g15460 | CX3g028187 | LOC_Os03g04545 | Os03g0138400 | - | Detail |
| C1H3g10085 | 3:1,934,900-1,936,414 | + | C2H3g21651 | CX3g026784 | LOC_Os03g04550 | Os03g0138500 | - | Detail |
| C1H3g00368 | 3:1,937,096-1,940,683 | - | C2H3g00575 | CX3g030039 | LOC_Os03g04560 | Os03g0138600 | - | Detail |
| C1H3g01644 | 3:1,943,352-1,947,970 | - | C2H3g22416 | CX3g028744 | LOC_Os03g04570 | Os03g0138700 | OsPTR1 | Detail |
| C1H3g14228 | 3:1,950,726-1,951,709 | + | C2H3g08919 | CX3g028323 | LOC_Os03g04580 | Os03g0138900 | - | Detail |
| C1H3g13763 | 3:1,953,454-1,956,207 | + | C2H3g29903 | CX3g027627 | LOC_Os03g04590 | Os03g0139100 | - | Detail |
| C1H3g21758 | 3:1,956,358-1,961,206 | - | C2H3g28589 | CX3g030974 | LOC_Os03g04600 | Os03g0139200 | - | Detail |
| C1H3g05378 | 3:1,965,110-1,966,075 | + | C2H3g22571 | CX3g025022 | LOC_Os03g04610 | Os03g0139400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03998 | 1:2,164,077-2,165,131 | - | C1H1g29078 | CX1g003888 | LOC_Os01g05370 | Os01g0144800 | - | Detail |
| C2H1g05408 | 1:2,174,818-2,178,246 | + | C1H1g29078 | CX1g003888 | LOC_Os01g05410 | Os01g0147001 | - | Detail |
| C2H1g08018 | 1:2,185,334-2,189,822 | + | C1H1g18605 | CX1g000323 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| C2H1g25573 | 1:2,191,220-2,194,402 | + | C1H1g08705 | CX1g001325 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| C2H1g12465 | 1:2,194,554-2,196,403 | - | C1H1g07217 | CX1g003030 | LOC_Os01g05440 | Os01g0147400 | - | Detail |
| C2H1g27793 | 1:2,197,356-2,199,409 | - | C1H1g03816 | - | LOC_Os01g05450 | Os01g0147600 | - | Detail |
| C2H1g00931 | 1:2,200,826-2,203,456 | - | C1H1g25686 | - | LOC_Os01g05460 | Os01g0147600 | - | Detail |
| C2H1g02244 | 1:2,205,153-2,207,498 | - | C1H1g30607 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g25353 | 1:2,210,513-2,219,278 | - | C1H1g11928 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g29480 | 1:2,221,494-2,225,565 | - | C1H1g17304 | CX1g005120 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| C2H1g30066 | 1:2,226,864-2,230,987 | - | C1H1g08404 | CX1g006525 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| C2H1g25150 | 1:2,236,272-2,249,202 | + | C1H1g03903 | CX1g001423 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| C2H1g10498 | 1:2,256,405-2,259,371 | - | C1H1g24472 | CX1g005368 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| C2H1g18971 | 1:2,261,730-2,262,191 | + | C1H1g09766 | CX1g005739 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| C2H1g06791 | 1:2,263,340-2,266,739 | - | C1H1g22469 | CX1g006643 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| C2H1g28846 | 1:2,268,550-2,269,982 | - | C1H1g18521 | - | LOC_Os01g05650 | Os01g0149800 | - | Detail |
| C2H1g25044 | 1:2,274,627-2,278,471 | - | C1H1g17924 | CX1g006502 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| C2H1g00511 | 1:2,283,854-2,287,505 | - | C1H1g30008 | CX1g002286 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| C2H1g17834 | 1:2,289,627-2,293,258 | + | C1H1g15806 | CX1g000079 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| C2H1g21300 | 1:2,294,207-2,296,973 | + | C1H1g24721 | CX4g035052 | LOC_Os01g05694 | Os01g0150200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |