| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20543 | 3:1,614,850-1,617,133 | + | C2H3g29451 | CX3g030865 | LOC_Os03g03890 | Os03g0131000 | - | Detail |
| C1H3g20869 | 3:1,617,782-1,622,965 | - | C2H3g00921 | CX3g029241 | LOC_Os03g03900 | Os03g0131100 | OsNLP1 | Detail |
| C1H3g01716 | 3:1,627,947-1,628,354 | + | - | - | - | - | - | Detail |
| C1H3g07647 | 3:1,628,836-1,629,228 | + | - | - | - | - | - | Detail |
| C1H3g21207 | 3:1,630,393-1,633,428 | - | C2H3g05397 | CX3g027343 | LOC_Os03g03910 | Os03g0131200 | - | Detail |
| C1H3g29193 | 3:1,634,240-1,639,738 | - | C2H3g25663 | CX3g027343 | LOC_Os03g03920 | Os03g0131300 | - | Detail |
| C1H3g04201 | 3:1,641,297-1,646,965 | - | C2H3g07948 | CX3g029745 | LOC_Os03g03930 | Os03g0131400 | - | Detail |
| C1H3g28233 | 3:1,647,139-1,650,167 | + | C2H3g06029 | CX3g026999 | LOC_Os03g03949 | Os03g0131500 | - | Detail |
| C1H3g02854 | 3:1,651,001-1,652,057 | + | C2H3g05494 | CX3g028529 | LOC_Os03g03980 | Os03g0131800 | - | Detail |
| C1H3g31581 | 3:1,653,204-1,654,370 | - | C2H3g22495 | CX3g029556 | LOC_Os03g03990 | Os03g0131900 | OscpSRP43, cpSRP43 | Detail |
| C1H3g06072 | 3:1,657,769-1,661,602 | + | C2H3g11143 | CX3g026513 | LOC_Os03g04000 | Os03g0132000 | - | Detail |
| C1H3g07116 | 3:1,669,602-1,671,436 | + | C2H3g03337 | CX3g026620 | LOC_Os03g04020 | Os03g0132200 | - | Detail |
| C1H3g18409 | 3:1,675,184-1,678,381 | - | C2H3g07678 | CX3g028694 | LOC_Os03g04030 | Os03g0132300 | - | Detail |
| C1H3g11603 | 3:1,693,890-1,698,703 | + | C2H3g02332 | CX3g030334 | LOC_Os03g04050 | Os03g0132800 | OsBSK1-1 | Detail |
| C1H3g08655 | 3:1,701,202-1,702,185 | + | - | CX3g028275 | LOC_Os03g04060 | Os03g0132900 | - | Detail |
| C1H3g17948 | 3:1,703,247-1,704,773 | - | C2H3g25865 | CX3g030345 | LOC_Os03g04070 | Os03g0133000 | NAC22, ONAC022 | Detail |
| C1H3g06331 | 3:1,712,010-1,712,357 | + | C2H3g07517 | CX3g030686 | LOC_Os03g04080 | Os03g0133100 | - | Detail |
| C1H3g07259 | 3:1,713,085-1,716,579 | - | - | CX3g026302 | - | - | - | Detail |
| C1H3g25947 | 3:1,716,856-1,720,783 | + | C2H3g25074 | CX3g029725 | LOC_Os03g04100 | Os03g0133300 | ESV1, Os-ESV1, LA3 | Detail |
| C1H3g11058 | 3:1,721,907-1,723,340 | + | C2H3g16071 | CX3g025596 | LOC_Os03g04110 | Os03g0133400 | CEBiP, OsCEBiP | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g22870 | 1:4,587,065-4,587,664 | - | C1H1g28329 | CX1g000104 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| C2H1g12871 | 1:4,589,682-4,591,118 | + | C1H1g05499 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C2H1g28373 | 1:4,605,875-4,613,282 | + | C1H1g14618 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| C2H1g18174 | 1:4,615,122-4,620,409 | - | C1H1g20387 | CX1g005780 | LOC_Os01g10050 | Os01g0197200 | - | Detail |
| C2H1g08298 | 1:4,623,015-4,623,565 | + | - | CX1g005103 | LOC_Os01g10070 | Os01g0197350 | - | Detail |
| C2H1g17197 | 1:4,624,739-4,627,138 | + | C1H1g24747 | CX1g005121 | LOC_Os01g10080 | Os01g0197400 | - | Detail |
| C2H1g01272 | 1:4,627,592-4,629,505 | - | C1H1g01968 | CX1g004435 | LOC_Os01g10090 | Os01g0197450 | - | Detail |
| C2H1g12602 | 1:4,630,262-4,632,510 | - | C1H1g23699 | CX1g002532 | LOC_Os01g10100 | Os01g0197500 | - | Detail |
| C2H1g29964 | 1:4,638,301-4,642,740 | - | C1H1g02388 | CX1g000181 | LOC_Os01g10110 | Os01g0197700 | Gn1a, OsCKX2 | Detail |
| C2H1g10405 | 1:4,651,798-4,653,068 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10130 | Os01g0197900 | OsRDR3 | Detail |
| C2H1g14250 | 1:4,653,235-4,665,018 | - | C1H1g16458 | CX1g006534 | - | Os01g0197900 | OsRDR3 | Detail |
| C2H1g22382 | 1:4,665,514-4,666,916 | - | C1H1g16458 | CX1g006534 | - | Os01g0197900 | OsRDR3 | Detail |
| C2H1g06287 | 1:4,668,151-4,669,334 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10140 | Os01g0198000 | OsRDR4 | Detail |
| C2H1g09190 | 1:4,669,519-4,679,023 | - | C1H1g16458 | CX1g006534 | LOC_Os01g10140 | Os01g0198000 | OsRDR4 | Detail |
| C2H1g16198 | 1:4,679,850-4,683,835 | - | C1H1g16458 | CX1g006534 | - | Os01g0198000 | OsRDR4 | Detail |
| C2H1g26620 | 1:4,688,816-4,695,355 | - | C1H1g16973 | CX1g001693 | LOC_Os01g10150 | Os01g0198200 | - | Detail |
| C2H1g23718 | 1:4,705,402-4,706,118 | - | C1H1g29548 | CX1g002926 | LOC_Os01g10180 | Os01g0198500 | - | Detail |
| C2H1g20955 | 1:4,726,171-4,726,818 | + | - | CX1g000304 | LOC_Os01g10210 | Os01g0198900 | - | Detail |
| C2H1g09712 | 1:4,734,659-4,735,255 | + | - | CX1g000572 | LOC_Os01g10230 | Os01g0199300 | - | Detail |
| C2H1g26709 | 1:4,738,822-4,743,043 | - | C1H1g25179 | CX1g006691 | LOC_Os01g10250 | Os01g0199400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |