| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20543 | 3:1,614,850-1,617,133 | + | C2H3g29451 | CX3g030865 | LOC_Os03g03890 | Os03g0131000 | - | Detail |
| C1H3g20869 | 3:1,617,782-1,622,965 | - | C2H3g00921 | CX3g029241 | LOC_Os03g03900 | Os03g0131100 | OsNLP1 | Detail |
| C1H3g01716 | 3:1,627,947-1,628,354 | + | - | - | - | - | - | Detail |
| C1H3g07647 | 3:1,628,836-1,629,228 | + | - | - | - | - | - | Detail |
| C1H3g21207 | 3:1,630,393-1,633,428 | - | C2H3g05397 | CX3g027343 | LOC_Os03g03910 | Os03g0131200 | - | Detail |
| C1H3g29193 | 3:1,634,240-1,639,738 | - | C2H3g25663 | CX3g027343 | LOC_Os03g03920 | Os03g0131300 | - | Detail |
| C1H3g04201 | 3:1,641,297-1,646,965 | - | C2H3g07948 | CX3g029745 | LOC_Os03g03930 | Os03g0131400 | - | Detail |
| C1H3g28233 | 3:1,647,139-1,650,167 | + | C2H3g06029 | CX3g026999 | LOC_Os03g03949 | Os03g0131500 | - | Detail |
| C1H3g02854 | 3:1,651,001-1,652,057 | + | C2H3g05494 | CX3g028529 | LOC_Os03g03980 | Os03g0131800 | - | Detail |
| C1H3g31581 | 3:1,653,204-1,654,370 | - | C2H3g22495 | CX3g029556 | LOC_Os03g03990 | Os03g0131900 | OscpSRP43, cpSRP43 | Detail |
| C1H3g06072 | 3:1,657,769-1,661,602 | + | C2H3g11143 | CX3g026513 | LOC_Os03g04000 | Os03g0132000 | - | Detail |
| C1H3g07116 | 3:1,669,602-1,671,436 | + | C2H3g03337 | CX3g026620 | LOC_Os03g04020 | Os03g0132200 | - | Detail |
| C1H3g18409 | 3:1,675,184-1,678,381 | - | C2H3g07678 | CX3g028694 | LOC_Os03g04030 | Os03g0132300 | - | Detail |
| C1H3g11603 | 3:1,693,890-1,698,703 | + | C2H3g02332 | CX3g030334 | LOC_Os03g04050 | Os03g0132800 | OsBSK1-1 | Detail |
| C1H3g08655 | 3:1,701,202-1,702,185 | + | - | CX3g028275 | LOC_Os03g04060 | Os03g0132900 | - | Detail |
| C1H3g17948 | 3:1,703,247-1,704,773 | - | C2H3g25865 | CX3g030345 | LOC_Os03g04070 | Os03g0133000 | NAC22, ONAC022 | Detail |
| C1H3g06331 | 3:1,712,010-1,712,357 | + | C2H3g07517 | CX3g030686 | LOC_Os03g04080 | Os03g0133100 | - | Detail |
| C1H3g07259 | 3:1,713,085-1,716,579 | - | - | CX3g026302 | - | - | - | Detail |
| C1H3g25947 | 3:1,716,856-1,720,783 | + | C2H3g25074 | CX3g029725 | LOC_Os03g04100 | Os03g0133300 | ESV1, Os-ESV1, LA3 | Detail |
| C1H3g11058 | 3:1,721,907-1,723,340 | + | C2H3g16071 | CX3g025596 | LOC_Os03g04110 | Os03g0133400 | CEBiP, OsCEBiP | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g11193 | 7:3,175,891-3,177,843 | - | C1H7g30359 | CX7g047617 | LOC_Os07g06960 | Os07g0163900 | - | Detail |
| C2H7g12803 | 7:3,178,494-3,183,889 | - | C1H7g13389 | CX7g046501 | LOC_Os07g06970 | Os07g0164000 | WAF1, waf1, waf1-1, waf1-2, HEN1 | Detail |
| C2H7g02116 | 7:3,185,221-3,194,275 | - | C1H7g24937 | CX7g046855 | LOC_Os07g06980 | Os07g0164100 | HDA704 | Detail |
| C2H7g08721 | 7:3,194,478-3,194,771 | + | C1H7g12322 | CX7g048709 | LOC_Os07g06990 | Os07g0164200 | - | Detail |
| C2H7g16406 | 7:3,194,886-3,195,576 | + | C1H7g12322 | CX7g048709 | LOC_Os07g06990 | Os07g0164200 | - | Detail |
| C2H7g19812 | 7:3,195,656-3,199,648 | - | C1H7g16672 | CX7g048627 | LOC_Os07g07000 | Os07g0164300 | OsSYP131a | Detail |
| C2H7g13004 | 7:3,202,448-3,205,688 | + | C1H7g03242 | CX7g047735 | LOC_Os07g07010 | Os07g0164500 | - | Detail |
| C2H7g29770 | 7:3,208,046-3,210,019 | + | C1H7g21914 | CX7g048909 | LOC_Os07g07020 | Os07g0164600 | - | Detail |
| C2H7g22158 | 7:3,212,250-3,214,460 | + | C1H7g10253 | CX7g050369 | LOC_Os07g07040 | Os07g0164800 | - | Detail |
| C2H7g29990 | 7:3,215,031-3,222,121 | - | C1H7g18807 | CX7g048267 | LOC_Os07g07050 | Os07g0164900 | - | Detail |
| C2H7g08797 | 7:3,224,526-3,230,641 | + | C1H7g00647 | CX7g048340 | LOC_Os07g07060 | Os07g0165000 | - | Detail |
| C2H7g24346 | 7:3,231,168-3,234,272 | - | C1H7g27659 | CX7g049088 | LOC_Os07g07070 | Os07g0165100 | - | Detail |
| C2H7g29244 | 7:3,237,129-3,244,460 | - | C1H7g00683 | CX7g049607 | LOC_Os07g07080 | Os07g0165200 | - | Detail |
| C2H7g00854 | 7:3,281,773-3,287,001 | - | - | CX7g050377 | LOC_Os07g07150 | Os07g0165700 | - | Detail |
| C2H7g28945 | 7:3,287,059-3,287,353 | - | - | - | LOC_Os07g07150 | Os07g0165700 | - | Detail |
| C2H7g13387 | 7:3,287,614-3,289,154 | + | - | CX7g047019 | - | - | - | Detail |
| C2H7g28487 | 7:3,293,764-3,294,854 | + | C1H7g08593 | CX7g046732 | LOC_Os07g07170 | Os07g0165900 | - | Detail |
| C2H7g29026 | 7:3,334,793-3,337,037 | + | C1H7g01183 | CX7g049710 | - | - | - | Detail |
| C2H7g16909 | 7:3,343,754-3,346,553 | + | C1H7g23721 | CX7g049551 | - | - | - | Detail |
| C2H7g11374 | 7:3,360,503-3,361,994 | - | C1H7g05391 | CX7g049569 | LOC_Os07g06930 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |