| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30034 | 3:1,473,834-1,479,587 | + | C2H3g30344 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C1H3g26756 | 3:1,484,404-1,486,683 | + | C2H3g21860 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C1H3g08238 | 3:1,487,075-1,490,723 | - | C2H3g23213 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C1H3g14096 | 3:1,495,192-1,503,539 | - | C2H3g26117 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C1H3g27982 | 3:1,504,077-1,507,573 | + | C2H3g26797 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C1H3g08454 | 3:1,509,217-1,509,630 | + | C2H3g27426 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C1H3g20373 | 3:1,509,954-1,512,589 | - | C2H3g07876 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C1H3g01611 | 3:1,514,016-1,514,345 | - | C2H3g29721 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C1H3g14716 | 3:1,514,497-1,518,794 | - | C2H3g13057 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C1H3g28130 | 3:1,527,218-1,530,084 | - | - | - | - | Os03g0129850 | - | Detail |
| C1H3g30382 | 3:1,535,201-1,535,536 | - | C2H3g05832 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C1H3g27546 | 3:1,553,842-1,556,113 | + | C2H3g07821 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C1H3g09567 | 3:1,558,977-1,559,702 | + | C2H3g09589 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C1H3g01006 | 3:1,562,020-1,562,374 | + | C2H3g10593 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C1H3g27010 | 3:1,563,645-1,566,964 | + | C2H3g18638 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C1H3g11205 | 3:1,567,280-1,575,087 | - | C2H3g06449 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C1H3g17616 | 3:1,579,109-1,583,980 | - | C2H3g20859 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| C1H3g26036 | 3:1,587,982-1,590,312 | - | C2H3g08783 | CX3g029309 | - | Os03g0130750 | - | Detail |
| C1H3g08344 | 3:1,592,535-1,598,584 | + | C2H3g05534 | CX3g026936 | LOC_Os03g03870 | Os03g0130800 | - | Detail |
| C1H3g09568 | 3:1,606,172-1,613,443 | + | C2H3g28810 | CX3g028472 | LOC_Os03g03880 | Os03g0130900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g17854 | 5:1,986,365-1,989,105 | + | C1H5g06617 | CX5g041028 | LOC_Os05g04850 | Os05g0140500 | OsY14a, Y14a, Tsunagi, RBM8 | Detail |
| C2H5g11120 | 5:1,990,448-1,994,019 | - | C1H5g27337 | CX5g037434 | LOC_Os05g04860 | Os05g0140600 | - | Detail |
| C2H5g05137 | 5:2,001,205-2,002,595 | - | C1H5g07901 | CX5g037644 | LOC_Os05g04870 | Os05g0140800 | - | Detail |
| C2H5g05092 | 5:2,008,868-2,015,794 | - | C1H5g21345 | CX5g040189 | LOC_Os05g04890 | Os05g0141000 | - | Detail |
| C2H5g10662 | 5:2,018,192-2,023,935 | - | C1H5g19698 | CX5g039228 | LOC_Os05g04914 | Os05g0141200 | - | Detail |
| C2H5g22940 | 5:2,033,817-2,036,843 | - | C1H5g02890 | CX5g039514 | LOC_Os05g04940 | Os05g0141400 | - | Detail |
| C2H5g29281 | 5:2,037,481-2,042,234 | - | C1H5g01265 | CX5g037614 | LOC_Os05g04950 | Os05g0141500 | - | Detail |
| C2H5g24711 | 5:2,048,918-2,058,412 | + | C1H5g28545 | CX5g037763 | LOC_Os05g04960 | Os05g0141700 | - | Detail |
| C2H5g02199 | 5:2,132,041-2,135,781 | + | C1H5g21606 | CX5g040648 | LOC_Os05g05130 | Os05g0143200 | - | Detail |
| C2H5g18500 | 5:2,136,267-2,139,691 | - | C1H5g00987 | CX5g038230 | LOC_Os05g05140 | Os05g0143300 | - | Detail |
| C2H5g21384 | 5:2,142,781-2,145,032 | + | C1H5g04744 | CX5g036859 | LOC_Os05g05150 | Os05g0143400 | - | Detail |
| C2H5g29296 | 5:2,147,926-2,155,281 | + | C1H5g27457 | CX5g036917 | LOC_Os05g05160 | Os05g0143500 | - | Detail |
| C2H5g22685 | 5:2,160,044-2,163,492 | - | C1H5g10365 | CX5g037961 | LOC_Os05g05180 | Os05g0143800 | - | Detail |
| C2H5g06932 | 5:2,167,178-2,174,537 | - | C1H5g29191 | CX5g037824 | LOC_Os05g05200 | Os05g0144000 | - | Detail |
| C2H5g15662 | 5:2,175,094-2,179,031 | + | C1H5g02281 | CX5g039026 | LOC_Os05g05210 | Os05g0144100 | - | Detail |
| C2H5g20065 | 5:2,180,104-2,184,321 | - | C1H5g15096 | CX5g038093 | LOC_Os05g05220 | Os05g0144200 | - | Detail |
| C2H5g11901 | 5:2,185,751-2,196,021 | - | C1H5g19739 | CX5g040491 | LOC_Os05g05230 | Os05g0144300 | OsCHR719, CHR719 | Detail |
| C2H5g11499 | 5:2,199,620-2,208,484 | + | C1H5g01986 | CX5g040168 | LOC_Os05g05240 | Os05g0144400 | OsPPKL2 | Detail |
| C2H5g14473 | 5:2,214,177-2,219,891 | - | C1H5g16759 | CX5g037072 | LOC_Os05g05260 | Os05g0144800 | - | Detail |
| C2H5g09730 | 5:2,225,114-2,228,156 | + | C1H5g20568 | CX5g039685 | LOC_Os05g05270 | Os05g0144900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |