| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30034 | 3:1,473,834-1,479,587 | + | C2H3g30344 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C1H3g26756 | 3:1,484,404-1,486,683 | + | C2H3g21860 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C1H3g08238 | 3:1,487,075-1,490,723 | - | C2H3g23213 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C1H3g14096 | 3:1,495,192-1,503,539 | - | C2H3g26117 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C1H3g27982 | 3:1,504,077-1,507,573 | + | C2H3g26797 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C1H3g08454 | 3:1,509,217-1,509,630 | + | C2H3g27426 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C1H3g20373 | 3:1,509,954-1,512,589 | - | C2H3g07876 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C1H3g01611 | 3:1,514,016-1,514,345 | - | C2H3g29721 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C1H3g14716 | 3:1,514,497-1,518,794 | - | C2H3g13057 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C1H3g28130 | 3:1,527,218-1,530,084 | - | - | - | - | Os03g0129850 | - | Detail |
| C1H3g30382 | 3:1,535,201-1,535,536 | - | C2H3g05832 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C1H3g27546 | 3:1,553,842-1,556,113 | + | C2H3g07821 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C1H3g09567 | 3:1,558,977-1,559,702 | + | C2H3g09589 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C1H3g01006 | 3:1,562,020-1,562,374 | + | C2H3g10593 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C1H3g27010 | 3:1,563,645-1,566,964 | + | C2H3g18638 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C1H3g11205 | 3:1,567,280-1,575,087 | - | C2H3g06449 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C1H3g17616 | 3:1,579,109-1,583,980 | - | C2H3g20859 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| C1H3g26036 | 3:1,587,982-1,590,312 | - | C2H3g08783 | CX3g029309 | - | Os03g0130750 | - | Detail |
| C1H3g08344 | 3:1,592,535-1,598,584 | + | C2H3g05534 | CX3g026936 | LOC_Os03g03870 | Os03g0130800 | - | Detail |
| C1H3g09568 | 3:1,606,172-1,613,443 | + | C2H3g28810 | CX3g028472 | LOC_Os03g03880 | Os03g0130900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g19126 | 4:28,482,932-28,483,633 | - | C1H4g06177 | CX4g036135 | LOC_Os04g55520 | Os04g0648900 | - | Detail |
| C2H4g07264 | 4:28,514,758-28,515,506 | + | C1H4g09680 | - | LOC_Os04g55560 | - | - | Detail |
| C2H4g14278 | 4:28,515,961-28,517,749 | + | C1H4g09680 | CX4g031647 | LOC_Os04g55560 | Os04g0649100 | SHAT1, AP2/EREBP#043, AP2/EREBP43 | Detail |
| C2H4g17474 | 4:28,522,715-28,529,752 | + | C1H4g00144 | CX4g035239 | LOC_Os04g55570 | Os04g0649200 | - | Detail |
| C2H4g02532 | 4:28,539,464-28,540,345 | - | C1H4g30735 | CX4g032527 | LOC_Os04g55590 | Os04g0649400 | WOX4, OsWOX4, Os WOX4 | Detail |
| C2H4g16594 | 4:28,545,758-28,546,096 | - | - | CX4g035485 | LOC_Os04g55600 | Os04g0649500 | - | Detail |
| C2H4g01325 | 4:28,552,020-28,552,618 | + | C1H4g22307 | - | - | - | - | Detail |
| C2H4g05985 | 4:28,552,135-28,552,428 | - | - | CX4g035117 | LOC_Os04g55610 | Os04g0649600 | - | Detail |
| C2H4g00524 | 4:28,554,014-28,557,592 | - | C1H4g26510 | CX4g031472 | LOC_Os04g55620 | Os04g0649700 | - | Detail |
| C2H4g24247 | 4:28,561,500-28,562,462 | + | C1H4g26377 | CX4g033189 | LOC_Os04g55640 | Os04g0649900 | - | Detail |
| C2H4g16213 | 4:28,567,208-28,567,720 | - | - | - | - | - | - | Detail |
| C2H4g10875 | 4:28,567,783-28,568,747 | + | C1H4g19253 | CX4g032778 | LOC_Os04g43030 | Os04g0509100 | - | Detail |
| C2H4g01573 | 4:28,569,522-28,573,198 | - | C1H4g30646 | CX4g032034 | LOC_Os04g55650 | Os04g0650000 | - | Detail |
| C2H4g09445 | 4:28,578,934-28,580,745 | - | C1H4g23223 | CX4g034578 | LOC_Os04g55660 | Os04g0650200 | - | Detail |
| C2H4g25070 | 4:28,582,467-28,585,780 | - | C1H4g17876 | CX4g035022 | LOC_Os04g55670 | Os04g0650300 | OsGT43I | Detail |
| C2H4g15264 | 4:28,590,936-28,592,348 | - | C1H4g16494 | CX4g036592 | LOC_Os04g55680 | Os04g0506000 | - | Detail |
| C2H4g30089 | 4:28,593,163-28,595,330 | + | C1H4g20767 | CX4g032417 | LOC_Os04g55690 | Os04g0650500 | - | Detail |
| C2H4g16279 | 4:28,595,912-28,598,901 | - | C1H4g29586 | CX4g034904 | LOC_Os04g55700 | Os04g0650600 | - | Detail |
| C2H4g25286 | 4:28,607,792-28,610,745 | + | C1H4g11243 | CX4g032420 | LOC_Os04g55710 | Os04g0650700 | - | Detail |
| C2H4g06390 | 4:28,613,676-28,616,566 | + | C1H4g03632 | CX4g033907 | LOC_Os04g55720 | Os04g0650800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |