| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30034 | 3:1,473,834-1,479,587 | + | C2H3g30344 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C1H3g26756 | 3:1,484,404-1,486,683 | + | C2H3g21860 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C1H3g08238 | 3:1,487,075-1,490,723 | - | C2H3g23213 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C1H3g14096 | 3:1,495,192-1,503,539 | - | C2H3g26117 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C1H3g27982 | 3:1,504,077-1,507,573 | + | C2H3g26797 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C1H3g08454 | 3:1,509,217-1,509,630 | + | C2H3g27426 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C1H3g20373 | 3:1,509,954-1,512,589 | - | C2H3g07876 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C1H3g01611 | 3:1,514,016-1,514,345 | - | C2H3g29721 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C1H3g14716 | 3:1,514,497-1,518,794 | - | C2H3g13057 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C1H3g28130 | 3:1,527,218-1,530,084 | - | - | - | - | Os03g0129850 | - | Detail |
| C1H3g30382 | 3:1,535,201-1,535,536 | - | C2H3g05832 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C1H3g27546 | 3:1,553,842-1,556,113 | + | C2H3g07821 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C1H3g09567 | 3:1,558,977-1,559,702 | + | C2H3g09589 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C1H3g01006 | 3:1,562,020-1,562,374 | + | C2H3g10593 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C1H3g27010 | 3:1,563,645-1,566,964 | + | C2H3g18638 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C1H3g11205 | 3:1,567,280-1,575,087 | - | C2H3g06449 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C1H3g17616 | 3:1,579,109-1,583,980 | - | C2H3g20859 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| C1H3g26036 | 3:1,587,982-1,590,312 | - | C2H3g08783 | CX3g029309 | - | Os03g0130750 | - | Detail |
| C1H3g08344 | 3:1,592,535-1,598,584 | + | C2H3g05534 | CX3g026936 | LOC_Os03g03870 | Os03g0130800 | - | Detail |
| C1H3g09568 | 3:1,606,172-1,613,443 | + | C2H3g28810 | CX3g028472 | LOC_Os03g03880 | Os03g0130900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g29145 | 6:23,706,166-23,709,605 | + | C1H6g30289 | CX6g043417 | LOC_Os06g44970 | Os06g0660200 | OsPIN2, PIN2 | Detail |
| C2H6g26561 | 6:23,723,911-23,725,981 | + | C1H6g10775 | CX6g042267 | LOC_Os06g45000 | Os06g0660700 | - | Detail |
| C2H6g03279 | 6:23,729,251-23,735,932 | + | C1H6g30897 | CX6g042767 | LOC_Os06g45020 | Os06g0660800 | - | Detail |
| C2H6g19984 | 6:23,746,714-23,747,683 | - | C1H6g04237 | CX6g043377 | - | - | - | Detail |
| C2H6g15814 | 6:23,749,994-23,753,615 | + | C1H6g27462 | CX6g044438 | LOC_Os06g45050 | Os06g0661400 | - | Detail |
| C2H6g03533 | 6:23,754,072-23,755,023 | - | C1H6g20860 | CX6g043401 | LOC_Os06g45060 | Os06g0661500 | - | Detail |
| C2H6g07549 | 6:23,757,720-23,762,154 | - | C1H6g10184 | CX6g042847 | LOC_Os06g45080 | Os06g0661700 | - | Detail |
| C2H6g01023 | 6:23,765,678-23,766,594 | + | C1H6g11026 | CX6g044489 | LOC_Os06g45090 | Os06g0661766 | - | Detail |
| C2H6g04346 | 6:23,767,921-23,768,905 | - | C1H6g25522 | CX6g042632 | LOC_Os06g45100 | Os06g0661800 | - | Detail |
| C2H6g03075 | 6:23,769,309-23,770,521 | - | C1H6g25522 | CX6g042632 | LOC_Os06g45100 | Os06g0661800 | - | Detail |
| C2H6g29640 | 6:23,771,435-23,776,537 | - | C1H6g23408 | CX6g045877 | LOC_Os06g45110 | Os06g0661900 | - | Detail |
| C2H6g27870 | 6:23,777,747-23,784,336 | - | C1H6g23397 | CX6g045100 | LOC_Os06g45120 | Os06g0662000 | PLS1, OsVHA-A, VHAA1, VHA-A1, OsPLS1, OsPLS1/VHA-A1 | Detail |
| C2H6g22069 | 6:23,790,852-23,792,411 | - | C1H11g18273 | - | - | - | - | Detail |
| C2H6g29043 | 6:23,794,036-23,796,026 | - | C1H6g11972 | CX6g043798 | LOC_Os06g45140 | Os06g0662200 | OsbZIP52, OsbZIP52/RISBZ5, RISBZ5 | Detail |
| C2H6g07889 | 6:23,827,399-23,831,478 | - | C1H6g07836 | CX6g043246 | LOC_Os06g45250 | Os06g0663100 | - | Detail |
| C2H6g25016 | 6:23,832,265-23,837,611 | - | C1H6g25311 | CX6g043895 | LOC_Os06g45280 | Os06g0663200 | - | Detail |
| C2H6g04522 | 6:23,852,131-23,854,533 | + | C1H6g07255 | CX6g044109 | LOC_Os06g45300 | Os06g0663400 | - | Detail |
| C2H6g09171 | 6:23,855,710-23,859,081 | - | C1H6g04964 | CX6g042273 | LOC_Os06g45310 | Os06g0663500 | - | Detail |
| C2H6g13796 | 6:23,865,676-23,867,856 | - | C1H6g11988 | CX6g041502 | LOC_Os06g45330 | Os06g0663600 | - | Detail |
| C2H6g08478 | 6:23,869,531-23,870,802 | - | C1H6g24851 | CX6g045945 | LOC_Os06g45340 | Os06g0663800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |