| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19764 | 3:1,330,606-1,334,329 | - | C2H3g09637 | CX3g026825 | LOC_Os03g03470 | Os03g0126300 | - | Detail |
| C1H3g31582 | 3:1,335,457-1,336,167 | - | C2H3g01245 | CX3g030498 | LOC_Os03g03480 | Os03g0126450 | - | Detail |
| C1H3g28463 | 3:1,338,762-1,339,451 | + | C2H3g24889 | CX3g031250 | LOC_Os03g03490 | Os03g0126600 | - | Detail |
| C1H3g02888 | 3:1,341,626-1,342,499 | + | C2H3g03559 | CX3g026627 | LOC_Os03g03500 | Os03g0126700 | - | Detail |
| C1H3g13225 | 3:1,345,288-1,349,052 | - | C2H3g24408 | CX3g025902 | LOC_Os03g03510 | Os03g0126800 | CIPK9 | Detail |
| C1H3g17944 | 3:1,363,757-1,364,113 | - | C2H3g27173 | CX3g025296 | LOC_Os03g03520 | Os03g0126900 | - | Detail |
| C1H3g26030 | 3:1,366,868-1,368,510 | - | C2H3g18981 | CX3g025913 | LOC_Os03g03530 | Os03g0127000 | - | Detail |
| C1H3g10455 | 3:1,368,703-1,368,945 | + | C2H3g03780 | - | - | - | - | Detail |
| C1H3g07061 | 3:1,370,739-1,373,094 | - | C2H3g10836 | CX3g025702 | LOC_Os03g03540 | Os03g0624600 | - | Detail |
| C1H3g08724 | 3:1,391,370-1,393,759 | + | C2H3g05840 | CX3g026687 | LOC_Os03g03550 | Os03g0127500 | - | Detail |
| C1H3g30951 | 3:1,394,084-1,399,068 | - | C2H3g22731 | CX3g027794 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| C1H3g04194 | 3:1,401,840-1,405,188 | + | C2H3g10932 | CX3g029550 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| C1H3g21101 | 3:1,408,304-1,415,858 | - | C2H3g19343 | CX3g028222 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| C1H3g15997 | 3:1,419,564-1,420,769 | + | C2H3g04515 | CX3g029732 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| C1H3g11304 | 3:1,422,238-1,442,796 | - | C2H3g21656 | CX3g027243 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| C1H3g22245 | 3:1,447,989-1,448,556 | - | C2H3g11243 | CX3g025297 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| C1H3g27628 | 3:1,449,997-1,451,209 | - | C2H3g19615 | CX3g029085 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| C1H3g25549 | 3:1,452,071-1,455,805 | - | C2H3g24976 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C1H3g29800 | 3:1,467,042-1,471,416 | + | C2H3g12077 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C1H3g05509 | 3:1,472,015-1,473,408 | - | C2H3g19950 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g07055 | 2:27,325,442-27,325,875 | - | - | CX2g024734 | LOC_Os02g48500 | - | - | Detail |
| C2H2g10463 | 2:27,348,082-27,349,248 | - | C1H2g16891 | CX2g023440 | LOC_Os02g48560 | Os02g0716500 | - | Detail |
| C2H2g21774 | 2:27,355,905-27,360,650 | - | C1H2g01901 | CX2g020074 | LOC_Os02g48570 | Os02g0716800 | - | Detail |
| C2H2g14528 | 2:27,364,835-27,366,360 | + | C1H2g08993 | CX2g019155 | LOC_Os02g48590 | Os02g0717100 | - | Detail |
| C2H2g13841 | 2:27,370,843-27,371,793 | + | - | CX2g019753 | LOC_Os02g48600 | Os02g0717200 | - | Detail |
| C2H2g18913 | 2:27,374,482-27,376,465 | + | C1H2g09406 | CX2g023240 | LOC_Os02g48610 | Os02g0717300 | - | Detail |
| C2H2g28722 | 2:27,378,934-27,390,604 | - | C1H2g19653 | CX2g019132 | LOC_Os02g48620 | Os02g0717400 | - | Detail |
| C2H2g29775 | 2:27,397,739-27,400,315 | + | C1H2g29287 | CX2g024079 | LOC_Os02g48630 | Os02g0717500 | - | Detail |
| C2H2g23859 | 2:27,400,484-27,404,148 | - | C1H2g12467 | CX2g021186 | LOC_Os02g48640 | Os02g0717600 | - | Detail |
| C2H2g28971 | 2:27,407,224-27,407,724 | + | - | CX2g023114 | LOC_Os02g48650 | Os02g0717700 | - | Detail |
| C2H2g12036 | 2:27,409,977-27,411,472 | - | C1H2g15048 | CX2g021971 | LOC_Os02g48660 | - | - | Detail |
| C2H2g01810 | 2:27,413,781-27,414,371 | - | - | CX2g023964 | LOC_Os02g48670 | Os02g0717900 | - | Detail |
| C2H2g28577 | 2:27,414,025-27,418,356 | + | C1H2g27254 | CX2g024923 | LOC_Os02g48680 | Os02g0718000 | - | Detail |
| C2H2g05372 | 2:27,425,248-27,425,457 | + | - | CX2g023541 | LOC_Os02g48710 | Os02g0718600 | - | Detail |
| C2H2g02359 | 2:27,430,050-27,433,481 | + | C1H2g29414 | CX2g024042 | LOC_Os02g48720 | Os02g0718900 | - | Detail |
| C2H2g19251 | 2:27,435,328-27,436,899 | - | - | - | LOC_Os02g44654 | Os02g0666500 | - | Detail |
| C2H2g20525 | 2:27,437,591-27,440,106 | + | C1H2g26150 | CX2g021808 | LOC_Os02g48730 | Os02g0719000 | - | Detail |
| C2H2g12096 | 2:27,443,599-27,448,371 | + | C1H2g28212 | CX2g021733 | LOC_Os02g48740 | Os02g0719100 | - | Detail |
| C2H2g00700 | 2:27,463,902-27,465,782 | + | C1H2g06293 | CX2g022686 | LOC_Os02g48770 | Os02g0719600 | - | Detail |
| C2H2g26511 | 2:27,472,355-27,472,975 | + | C1H2g04256 | CX2g022391 | LOC_Os02g48780 | Os02g0719700 | OsBAG5 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |