| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19764 | 3:1,330,606-1,334,329 | - | C2H3g09637 | CX3g026825 | LOC_Os03g03470 | Os03g0126300 | - | Detail |
| C1H3g31582 | 3:1,335,457-1,336,167 | - | C2H3g01245 | CX3g030498 | LOC_Os03g03480 | Os03g0126450 | - | Detail |
| C1H3g28463 | 3:1,338,762-1,339,451 | + | C2H3g24889 | CX3g031250 | LOC_Os03g03490 | Os03g0126600 | - | Detail |
| C1H3g02888 | 3:1,341,626-1,342,499 | + | C2H3g03559 | CX3g026627 | LOC_Os03g03500 | Os03g0126700 | - | Detail |
| C1H3g13225 | 3:1,345,288-1,349,052 | - | C2H3g24408 | CX3g025902 | LOC_Os03g03510 | Os03g0126800 | CIPK9 | Detail |
| C1H3g17944 | 3:1,363,757-1,364,113 | - | C2H3g27173 | CX3g025296 | LOC_Os03g03520 | Os03g0126900 | - | Detail |
| C1H3g26030 | 3:1,366,868-1,368,510 | - | C2H3g18981 | CX3g025913 | LOC_Os03g03530 | Os03g0127000 | - | Detail |
| C1H3g10455 | 3:1,368,703-1,368,945 | + | C2H3g03780 | - | - | - | - | Detail |
| C1H3g07061 | 3:1,370,739-1,373,094 | - | C2H3g10836 | CX3g025702 | LOC_Os03g03540 | Os03g0624600 | - | Detail |
| C1H3g08724 | 3:1,391,370-1,393,759 | + | C2H3g05840 | CX3g026687 | LOC_Os03g03550 | Os03g0127500 | - | Detail |
| C1H3g30951 | 3:1,394,084-1,399,068 | - | C2H3g22731 | CX3g027794 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| C1H3g04194 | 3:1,401,840-1,405,188 | + | C2H3g10932 | CX3g029550 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| C1H3g21101 | 3:1,408,304-1,415,858 | - | C2H3g19343 | CX3g028222 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| C1H3g15997 | 3:1,419,564-1,420,769 | + | C2H3g04515 | CX3g029732 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| C1H3g11304 | 3:1,422,238-1,442,796 | - | C2H3g21656 | CX3g027243 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| C1H3g22245 | 3:1,447,989-1,448,556 | - | C2H3g11243 | CX3g025297 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| C1H3g27628 | 3:1,449,997-1,451,209 | - | C2H3g19615 | CX3g029085 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| C1H3g25549 | 3:1,452,071-1,455,805 | - | C2H3g24976 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C1H3g29800 | 3:1,467,042-1,471,416 | + | C2H3g12077 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C1H3g05509 | 3:1,472,015-1,473,408 | - | C2H3g19950 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g23824 | 8:12,454,897-12,461,806 | + | C1H8g02665 | CX8g051569 | LOC_Os08g25460 | Os08g0343300 | - | Detail |
| C2H8g03561 | 8:12,487,885-12,492,893 | + | C1H8g03422 | CX8g054265 | LOC_Os08g25570 | Os08g0344100 | HDA705 | Detail |
| C2H8g01292 | 8:12,497,487-12,500,160 | + | C1H8g26450 | CX8g053409 | LOC_Os08g25590 | Os08g0344300 | - | Detail |
| C2H8g11790 | 8:12,517,572-12,524,502 | + | C1H8g10651 | CX8g052320 | LOC_Os08g25624 | Os08g0344600 | - | Detail |
| C2H8g12513 | 8:12,532,056-12,534,722 | - | C1H8g20278 | - | LOC_Os08g25650 | Os08g0344700 | - | Detail |
| C2H8g16407 | 8:12,563,415-12,567,630 | + | C1H8g25968 | CX8g052031 | LOC_Os08g25700 | Os08g0345400 | - | Detail |
| C2H8g24323 | 8:12,568,325-12,571,849 | - | C1H8g12292 | CX8g052325 | LOC_Os08g25710 | Os08g0345500 | OsCSLD3 | Detail |
| C2H8g06425 | 8:12,586,267-12,591,745 | + | C1H8g12100 | CX8g050703 | LOC_Os08g25720 | Os08g0345700 | - | Detail |
| C2H8g27123 | 8:12,594,021-12,598,874 | - | C1H8g19081 | CX8g051031 | LOC_Os08g25734 | Os08g0345800 | - | Detail |
| C2H8g28985 | 8:12,629,432-12,629,862 | + | C1H8g07083 | CX8g052103 | LOC_Os08g25799 | Os08g0346400 | - | Detail |
| C2H8g06241 | 8:12,637,104-12,637,373 | + | C1H8g08620 | CX8g052778 | LOC_Os08g25799 | Os08g0346400 | - | Detail |
| C2H8g09478 | 8:12,646,233-12,652,253 | + | C1H8g10093 | CX8g052103 | LOC_Os08g25820 | Os08g0346500 | - | Detail |
| C2H8g20463 | 8:12,667,391-12,669,572 | - | C1H8g17213 | - | LOC_Os08g25839 | Os08g0346900 | - | Detail |
| C2H8g27458 | 8:12,689,000-12,693,494 | - | C1H8g08615 | - | LOC_Os08g25860 | - | - | Detail |
| C2H8g14625 | 8:12,698,530-12,698,766 | - | C1H8g17213 | - | LOC_Os08g25839 | Os08g0346900 | - | Detail |
| C2H8g01255 | 8:12,703,999-12,705,053 | - | C1H8g00829 | - | LOC_Os08g25850 | Os08g0347000 | - | Detail |
| C2H8g06999 | 8:12,749,801-12,752,239 | - | C1H8g00829 | - | LOC_Os08g25850 | Os08g0347000 | - | Detail |
| C2H8g24907 | 8:12,774,800-12,775,116 | - | C1H8g04458 | CX8g054180 | - | - | - | Detail |
| C2H8g05957 | 8:12,785,155-12,785,880 | - | C1H8g04474 | - | LOC_Os08g25890 | Os08g0347500 | - | Detail |
| C2H8g27009 | 8:12,787,149-12,791,563 | - | C1H8g14252 | CX8g052327 | LOC_Os08g25900 | Os08g0347500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |