| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14139 | 3:1,196,798-1,202,229 | + | C2H3g00396 | CX3g026340 | LOC_Os03g03164 | Os03g0123500 | HOS66, HOS66S | Detail |
| C1H3g07667 | 3:1,203,310-1,206,470 | - | C2H3g00632 | CX3g027409 | LOC_Os03g03180 | Os03g0123600 | - | Detail |
| C1H3g01390 | 3:1,209,436-1,210,395 | - | C2H3g19198 | CX3g025593 | LOC_Os11g34910 | Os11g0550300 | - | Detail |
| C1H3g08918 | 3:1,214,219-1,216,013 | + | C2H3g13822 | CX3g025457 | LOC_Os03g03200 | Os03g0123800 | - | Detail |
| C1H3g08025 | 3:1,217,866-1,218,564 | + | C2H3g17363 | CX3g029809 | LOC_Os02g13020 | - | - | Detail |
| C1H3g22053 | 3:1,227,572-1,233,489 | + | C2H3g11416 | CX3g025586 | LOC_Os03g03260 | Os03g0124000 | OsHB22 | Detail |
| C1H3g12842 | 3:1,236,142-1,237,813 | + | C2H3g23812 | CX3g029945 | LOC_Os03g03270 | Os03g0124100 | - | Detail |
| C1H3g06423 | 3:1,239,734-1,242,415 | + | C2H3g17495 | CX3g029915 | LOC_Os03g03280 | Os03g0124200 | - | Detail |
| C1H3g21157 | 3:1,243,927-1,245,327 | + | C2H3g27072 | CX3g027531 | LOC_Os03g03290 | Os03g0124300 | - | Detail |
| C1H3g07613 | 3:1,252,329-1,253,207 | + | C2H3g24607 | CX3g026326 | LOC_Os03g03320 | Os03g0124500 | - | Detail |
| C1H3g04841 | 3:1,262,744-1,265,831 | + | C2H3g11584 | CX3g030707 | LOC_Os03g03350 | Os03g0124900 | OsPG1 | Detail |
| C1H3g23961 | 3:1,265,828-1,267,359 | - | C2H3g17248 | CX3g028338 | LOC_Os03g03360 | Os03g0125000 | - | Detail |
| C1H3g31110 | 3:1,268,721-1,271,134 | - | C2H3g15002 | CX3g029957 | LOC_Os03g03370 | Os03g0125100 | DSM2, OsBCH1, OsHYD3 | Detail |
| C1H3g17673 | 3:1,276,687-1,284,038 | + | C2H3g15732 | CX3g026725 | LOC_Os03g03390 | Os03g0125300 | - | Detail |
| C1H3g28194 | 3:1,288,411-1,292,930 | + | C2H3g14454 | CX3g029384 | LOC_Os03g03410 | Os03g0125600 | - | Detail |
| C1H3g27909 | 3:1,296,454-1,299,299 | - | C2H3g24007 | CX3g031344 | LOC_Os03g03420 | Os03g0125700 | - | Detail |
| C1H3g30116 | 3:1,307,476-1,313,029 | + | C2H3g15544 | CX3g029108 | LOC_Os03g03430 | Os03g0125800 | - | Detail |
| C1H3g10403 | 3:1,314,001-1,315,563 | + | C2H3g23265 | CX3g027007 | LOC_Os03g03440 | Os03g0125900 | - | Detail |
| C1H3g12126 | 3:1,315,772-1,320,424 | - | C2H3g03318 | CX3g030160 | LOC_Os03g03450 | Os03g0126000 | - | Detail |
| C1H3g18852 | 3:1,324,184-1,329,044 | - | C2H3g01117 | CX3g027762 | LOC_Os03g03460 | Os03g0126100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23906 | 1:3,381,483-3,385,918 | - | C1H1g05589 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g04507 | 1:3,398,823-3,403,477 | - | C1H1g28606 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g23380 | 1:3,413,356-3,414,660 | - | C1H1g24276 | CX1g003747 | LOC_Os01g08090 | Os01g0175850 | - | Detail |
| C2H1g06989 | 1:3,415,463-3,415,867 | - | C1H1g02538 | CX1g003747 | LOC_Os01g08110 | Os01g0175850 | - | Detail |
| C2H1g10547 | 1:3,417,407-3,418,830 | + | C1H1g24276 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C2H1g11095 | 1:3,421,993-3,423,776 | + | C1H1g30308 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C2H1g17460 | 1:3,425,241-3,426,876 | + | C1H1g02538 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C2H1g07226 | 1:3,428,224-3,430,095 | - | C1H1g07070 | CX1g004833 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| C2H1g17877 | 1:3,433,400-3,438,193 | + | C1H1g22640 | CX1g005143 | LOC_Os01g08140 | Os01g0176400 | - | Detail |
| C2H1g05536 | 1:3,438,244-3,441,512 | - | C1H1g06103 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C2H1g25065 | 1:3,452,030-3,453,892 | + | C1H1g20288 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C2H1g28512 | 1:3,457,558-3,460,824 | + | - | CX1g002845 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| C2H1g06706 | 1:3,461,330-3,462,703 | - | C1H1g31422 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C2H1g26258 | 1:3,472,856-3,481,479 | + | C1H1g14865 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C2H1g16195 | 1:3,483,355-3,492,235 | + | C1H1g25960 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C2H1g03295 | 1:3,501,968-3,503,204 | - | C1H1g22558 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C2H1g21612 | 1:3,517,183-3,518,727 | + | C1H9g14927 | CX1g001472 | LOC_Os01g20190 | Os06g0474600 | - | Detail |
| C2H1g12398 | 1:3,535,939-3,545,731 | - | C1H1g04757 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C2H1g19074 | 1:3,553,284-3,558,271 | - | C1H1g28750 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C2H1g18970 | 1:3,559,896-3,563,139 | + | C1H1g30727 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |