| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03441 | 3:994,508-997,871 | - | C2H3g02407 | CX3g026290 | LOC_Os03g02850 | Os03g0120300 | - | Detail |
| C1H3g10934 | 3:999,392-1,000,895 | - | C2H3g11600 | CX3g025360 | LOC_Os03g02860 | Os03g0120400 | - | Detail |
| C1H3g08539 | 3:1,007,973-1,011,218 | + | C2H3g16408 | CX3g028149 | LOC_Os03g02890 | Os03g0120800 | - | Detail |
| C1H3g19352 | 3:1,027,333-1,028,259 | + | C2H3g18948 | CX3g029289 | LOC_Os03g02900 | Os03g0120900 | - | Detail |
| C1H3g28264 | 3:1,045,562-1,049,655 | - | C2H3g18738 | CX3g025034 | LOC_Os03g02920 | Os03g0121200 | - | Detail |
| C1H3g20047 | 3:1,052,087-1,053,631 | - | C2H3g23557 | CX3g026688 | LOC_Os03g02939 | Os03g0121300 | - | Detail |
| C1H3g01141 | 3:1,060,364-1,061,638 | + | C2H3g04065 | CX3g025202 | LOC_Os03g02960 | Os03g0121700 | - | Detail |
| C1H3g02111 | 3:1,061,738-1,070,945 | - | C2H3g16968 | CX3g027774 | LOC_Os03g02970 | Os03g0121800 | DCL1, Dcl1, OsDCL1, osDCL1, Os-DCL1 | Detail |
| C1H3g23785 | 3:1,082,343-1,088,301 | + | C2H3g23905 | CX3g028931 | LOC_Os03g02980 | Os03g0122000 | - | Detail |
| C1H3g05090 | 3:1,096,037-1,096,413 | + | C2H3g27024 | - | - | - | - | Detail |
| C1H3g07706 | 3:1,096,600-1,099,509 | + | C2H3g24994 | CX3g026004 | LOC_Os03g03000 | Os03g0122100 | - | Detail |
| C1H3g24387 | 3:1,102,330-1,104,223 | - | C2H3g11967 | CX3g025069 | LOC_Os03g03020 | Os03g0122200 | - | Detail |
| C1H3g05611 | 3:1,105,304-1,111,129 | - | C2H3g05774 | CX3g031243 | LOC_Os03g03034 | Os03g0122300 | - | Detail |
| C1H3g26838 | 3:1,126,687-1,131,268 | - | C2H3g15040 | CX3g027036 | LOC_Os03g03070 | Os03g0122600 | - | Detail |
| C1H3g05142 | 3:1,150,988-1,152,633 | - | C2H3g18287 | CX3g025481 | LOC_Os03g03100 | Os03g0834466 | - | Detail |
| C1H3g05064 | 3:1,164,019-1,171,711 | - | C2H9g16327 | CX3g025474 | LOC_Os04g22720 | Os08g0392500 | - | Detail |
| C1H3g18665 | 3:1,174,055-1,174,690 | + | C2H3g16267 | CX3g031045 | - | - | - | Detail |
| C1H3g16789 | 3:1,175,364-1,178,417 | + | C2H3g19854 | CX3g030103 | LOC_Os03g03130 | Os03g0123100 | OsSCE2 | Detail |
| C1H3g27844 | 3:1,179,722-1,181,180 | + | C2H3g21601 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C1H3g09795 | 3:1,184,106-1,188,005 | + | C2H3g04889 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g25947 | 1:9,237,227-9,238,700 | - | C1H1g02909 | CX1g001405 | LOC_Os11g02650 | - | - | Detail |
| C2H1g12260 | 1:9,240,388-9,240,864 | - | C1H1g25972 | - | LOC_Os01g13050 | Os01g0861400 | - | Detail |
| C2H1g13264 | 1:9,242,580-9,246,152 | + | C1H1g02936 | CX1g004036 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| C2H1g18493 | 1:9,260,032-9,263,328 | + | C1H1g02001 | CX1g000296 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| C2H1g16973 | 1:9,300,519-9,300,707 | + | C1H1g26094 | CX1g002314 | LOC_Os05g04700 | - | - | Detail |
| C2H1g04657 | 1:9,303,104-9,303,481 | - | C1H1g20358 | CX1g007034 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| C2H1g10428 | 1:9,303,977-9,304,468 | - | C1H1g26001 | CX1g007034 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| C2H1g21581 | 1:9,332,228-9,332,588 | - | C1H1g01375 | CX1g005603 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| C2H1g03324 | 1:9,346,774-9,347,076 | - | C1H1g15975 | - | LOC_Os01g18490 | Os01g0288800 | - | Detail |
| C2H1g30606 | 1:9,356,690-9,356,998 | - | C1H1g15975 | CX1g006610 | LOC_Os01g18530 | Os01g0289100 | - | Detail |
| C2H1g28353 | 1:9,359,956-9,360,261 | - | C1H1g15975 | CX1g006610 | LOC_Os01g18530 | Os01g0289100 | - | Detail |
| C2H1g00434 | 1:9,390,275-9,396,795 | + | C1H1g27658 | CX1g004171 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| C2H1g15794 | 1:9,410,669-9,412,142 | - | C1H1g31040 | CX1g002453 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| C2H1g01894 | 1:9,427,709-9,431,055 | - | C1H1g10493 | - | LOC_Os01g17080 | - | - | Detail |
| C2H1g23760 | 1:9,431,767-9,433,279 | - | C1H1g09358 | CX1g003482 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| C2H1g28620 | 1:9,434,748-9,438,379 | - | C1H1g20536 | CX1g007116 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| C2H1g18032 | 1:9,442,152-9,443,594 | - | C1H1g06449 | CX1g001189 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| C2H1g16260 | 1:9,448,085-9,449,515 | + | C1H1g00431 | CX1g003793 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| C2H1g08075 | 1:9,454,121-9,460,331 | - | C1H1g25669 | CX1g004035 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| C2H1g01408 | 1:9,467,543-9,469,804 | + | C1H1g05215 | CX1g000749 | LOC_Os11g10490 | Os01g0807000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |