| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03441 | 3:994,508-997,871 | - | C2H3g02407 | CX3g026290 | LOC_Os03g02850 | Os03g0120300 | - | Detail |
| C1H3g10934 | 3:999,392-1,000,895 | - | C2H3g11600 | CX3g025360 | LOC_Os03g02860 | Os03g0120400 | - | Detail |
| C1H3g08539 | 3:1,007,973-1,011,218 | + | C2H3g16408 | CX3g028149 | LOC_Os03g02890 | Os03g0120800 | - | Detail |
| C1H3g19352 | 3:1,027,333-1,028,259 | + | C2H3g18948 | CX3g029289 | LOC_Os03g02900 | Os03g0120900 | - | Detail |
| C1H3g28264 | 3:1,045,562-1,049,655 | - | C2H3g18738 | CX3g025034 | LOC_Os03g02920 | Os03g0121200 | - | Detail |
| C1H3g20047 | 3:1,052,087-1,053,631 | - | C2H3g23557 | CX3g026688 | LOC_Os03g02939 | Os03g0121300 | - | Detail |
| C1H3g01141 | 3:1,060,364-1,061,638 | + | C2H3g04065 | CX3g025202 | LOC_Os03g02960 | Os03g0121700 | - | Detail |
| C1H3g02111 | 3:1,061,738-1,070,945 | - | C2H3g16968 | CX3g027774 | LOC_Os03g02970 | Os03g0121800 | DCL1, Dcl1, OsDCL1, osDCL1, Os-DCL1 | Detail |
| C1H3g23785 | 3:1,082,343-1,088,301 | + | C2H3g23905 | CX3g028931 | LOC_Os03g02980 | Os03g0122000 | - | Detail |
| C1H3g05090 | 3:1,096,037-1,096,413 | + | C2H3g27024 | - | - | - | - | Detail |
| C1H3g07706 | 3:1,096,600-1,099,509 | + | C2H3g24994 | CX3g026004 | LOC_Os03g03000 | Os03g0122100 | - | Detail |
| C1H3g24387 | 3:1,102,330-1,104,223 | - | C2H3g11967 | CX3g025069 | LOC_Os03g03020 | Os03g0122200 | - | Detail |
| C1H3g05611 | 3:1,105,304-1,111,129 | - | C2H3g05774 | CX3g031243 | LOC_Os03g03034 | Os03g0122300 | - | Detail |
| C1H3g26838 | 3:1,126,687-1,131,268 | - | C2H3g15040 | CX3g027036 | LOC_Os03g03070 | Os03g0122600 | - | Detail |
| C1H3g05142 | 3:1,150,988-1,152,633 | - | C2H3g18287 | CX3g025481 | LOC_Os03g03100 | Os03g0834466 | - | Detail |
| C1H3g05064 | 3:1,164,019-1,171,711 | - | C2H9g16327 | CX3g025474 | LOC_Os04g22720 | Os08g0392500 | - | Detail |
| C1H3g18665 | 3:1,174,055-1,174,690 | + | C2H3g16267 | CX3g031045 | - | - | - | Detail |
| C1H3g16789 | 3:1,175,364-1,178,417 | + | C2H3g19854 | CX3g030103 | LOC_Os03g03130 | Os03g0123100 | OsSCE2 | Detail |
| C1H3g27844 | 3:1,179,722-1,181,180 | + | C2H3g21601 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C1H3g09795 | 3:1,184,106-1,188,005 | + | C2H3g04889 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g06640 | 12:8,951,711-8,952,933 | - | C1H12g28480 | CX12g016081 | LOC_Os12g18450 | Os12g0282400 | - | Detail |
| C2H12g14310 | 12:8,966,852-8,967,450 | - | - | CX12g017782 | LOC_Os12g18410 | Os12g0282000 | MIR | Detail |
| C2H12g11580 | 12:8,993,932-8,995,807 | + | - | CX12g017328 | - | Os12g0282766 | - | Detail |
| C2H12g22248 | 12:9,002,711-9,008,145 | - | C1H12g13301 | CX12g016673 | LOC_Os12g18530 | Os12g0283100 | - | Detail |
| C2H12g16417 | 12:9,011,625-9,012,152 | + | - | CX12g018374 | - | - | - | Detail |
| C2H12g13366 | 12:9,059,132-9,065,509 | - | C1H12g08210 | CX12g018758 | LOC_Os12g18630 | Os12g0283800 | - | Detail |
| C2H12g17018 | 12:9,069,231-9,071,343 | + | C1H12g17702 | CX12g016298 | LOC_Os12g18640 | Os12g0283900 | - | Detail |
| C2H12g14275 | 12:9,074,850-9,077,965 | + | C1H12g08453 | CX12g016374 | LOC_Os12g18650 | Os12g0284000 | - | Detail |
| C2H12g05035 | 12:9,095,903-9,098,425 | + | C1H12g06469 | CX12g015122 | LOC_Os12g18690 | Os12g0284700 | - | Detail |
| C2H12g22271 | 12:9,147,544-9,156,643 | + | C1H12g23565 | CX12g017352 | LOC_Os12g18729 | Os12g0284700 | - | Detail |
| C2H12g25212 | 12:9,166,260-9,174,398 | + | C1H12g16505 | CX12g015904 | LOC_Os12g18760 | Os12g0285500 | - | Detail |
| C2H12g25720 | 12:9,177,709-9,185,814 | - | C1H12g05263 | CX12g015593 | LOC_Os12g18770 | Os12g0285600 | - | Detail |
| C2H12g14778 | 12:9,220,533-9,220,886 | - | C1H12g24509 | CX12g017357 | LOC_Os12g42180 | Os12g0616200 | - | Detail |
| C2H12g23004 | 12:9,223,927-9,233,485 | - | C1H12g17099 | CX12g016413 | LOC_Os12g18820 | Os12g0286300 | - | Detail |
| C2H12g08062 | 12:9,247,340-9,254,047 | - | C1H12g29089 | CX12g015397 | LOC_Os12g18860 | Os12g0286600 | - | Detail |
| C2H12g26012 | 12:9,272,093-9,274,570 | + | C1H12g13670 | CX12g015259 | LOC_Os12g18880 | Os12g0287200 | OsMAGO2, MAGO2, mago | Detail |
| C2H12g03361 | 12:9,275,854-9,283,131 | - | C1H12g18896 | CX12g017307 | LOC_Os12g18900 | Os12g0287300 | - | Detail |
| C2H12g03658 | 12:9,390,634-9,392,787 | - | C1H12g12725 | CX12g016326 | LOC_Os12g18960 | Os12g0288000 | - | Detail |
| C2H12g25084 | 12:9,431,076-9,436,734 | - | C1H12g12298 | CX12g017261 | LOC_Os12g19030 | Os12g0288400 | - | Detail |
| C2H12g09007 | 12:9,439,338-9,452,576 | - | C1H12g22725 | CX12g018647 | LOC_Os12g19040 | Os12g0288600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |