| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03441 | 3:994,508-997,871 | - | C2H3g02407 | CX3g026290 | LOC_Os03g02850 | Os03g0120300 | - | Detail |
| C1H3g10934 | 3:999,392-1,000,895 | - | C2H3g11600 | CX3g025360 | LOC_Os03g02860 | Os03g0120400 | - | Detail |
| C1H3g08539 | 3:1,007,973-1,011,218 | + | C2H3g16408 | CX3g028149 | LOC_Os03g02890 | Os03g0120800 | - | Detail |
| C1H3g19352 | 3:1,027,333-1,028,259 | + | C2H3g18948 | CX3g029289 | LOC_Os03g02900 | Os03g0120900 | - | Detail |
| C1H3g28264 | 3:1,045,562-1,049,655 | - | C2H3g18738 | CX3g025034 | LOC_Os03g02920 | Os03g0121200 | - | Detail |
| C1H3g20047 | 3:1,052,087-1,053,631 | - | C2H3g23557 | CX3g026688 | LOC_Os03g02939 | Os03g0121300 | - | Detail |
| C1H3g01141 | 3:1,060,364-1,061,638 | + | C2H3g04065 | CX3g025202 | LOC_Os03g02960 | Os03g0121700 | - | Detail |
| C1H3g02111 | 3:1,061,738-1,070,945 | - | C2H3g16968 | CX3g027774 | LOC_Os03g02970 | Os03g0121800 | DCL1, Dcl1, OsDCL1, osDCL1, Os-DCL1 | Detail |
| C1H3g23785 | 3:1,082,343-1,088,301 | + | C2H3g23905 | CX3g028931 | LOC_Os03g02980 | Os03g0122000 | - | Detail |
| C1H3g05090 | 3:1,096,037-1,096,413 | + | C2H3g27024 | - | - | - | - | Detail |
| C1H3g07706 | 3:1,096,600-1,099,509 | + | C2H3g24994 | CX3g026004 | LOC_Os03g03000 | Os03g0122100 | - | Detail |
| C1H3g24387 | 3:1,102,330-1,104,223 | - | C2H3g11967 | CX3g025069 | LOC_Os03g03020 | Os03g0122200 | - | Detail |
| C1H3g05611 | 3:1,105,304-1,111,129 | - | C2H3g05774 | CX3g031243 | LOC_Os03g03034 | Os03g0122300 | - | Detail |
| C1H3g26838 | 3:1,126,687-1,131,268 | - | C2H3g15040 | CX3g027036 | LOC_Os03g03070 | Os03g0122600 | - | Detail |
| C1H3g05142 | 3:1,150,988-1,152,633 | - | C2H3g18287 | CX3g025481 | LOC_Os03g03100 | Os03g0834466 | - | Detail |
| C1H3g05064 | 3:1,164,019-1,171,711 | - | C2H9g16327 | CX3g025474 | LOC_Os04g22720 | Os08g0392500 | - | Detail |
| C1H3g18665 | 3:1,174,055-1,174,690 | + | C2H3g16267 | CX3g031045 | - | - | - | Detail |
| C1H3g16789 | 3:1,175,364-1,178,417 | + | C2H3g19854 | CX3g030103 | LOC_Os03g03130 | Os03g0123100 | OsSCE2 | Detail |
| C1H3g27844 | 3:1,179,722-1,181,180 | + | C2H3g21601 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C1H3g09795 | 3:1,184,106-1,188,005 | + | C2H3g04889 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g17616 | 9:14,679,443-14,684,139 | + | C1H9g08405 | CX9g055989 | LOC_Os09g28850 | Os09g0463300 | - | Detail |
| C2H9g06208 | 9:14,711,845-14,712,536 | + | C1H9g29908 | CX9g055813 | LOC_Os09g28900 | Os09g0463900 | - | Detail |
| C2H9g27359 | 9:14,714,011-14,718,556 | - | C1H9g11908 | CX9g057340 | LOC_Os09g28910 | Os09g0464000 | - | Detail |
| C2H9g10275 | 9:14,742,192-14,750,414 | - | C1H9g02656 | CX9g056356 | LOC_Os09g28940 | Os09g0464400 | - | Detail |
| C2H9g25155 | 9:14,764,460-14,764,774 | + | C1H9g04483 | CX9g057144 | LOC_Os09g29060 | Os09g0465500 | - | Detail |
| C2H9g10037 | 9:14,767,397-14,771,976 | - | C1H9g24729 | CX9g056841 | LOC_Os09g29070 | Os09g0465600 | - | Detail |
| C2H9g22919 | 9:14,775,851-14,777,975 | - | C1H9g12572 | CX9g057911 | LOC_Os09g29080 | Os09g0465800 | - | Detail |
| C2H9g21929 | 9:14,792,272-14,794,654 | + | C1H9g18542 | CX9g056879 | LOC_Os09g29100 | Os09g0466100 | - | Detail |
| C2H9g06026 | 9:14,804,180-14,805,240 | + | C1H9g27978 | CX9g057731 | LOC_Os09g29120 | Os09g0466300 | - | Detail |
| C2H9g23605 | 9:14,836,407-14,838,172 | - | C1H9g11729 | CX9g056583 | LOC_Os09g29160 | Os09g0466800 | - | Detail |
| C2H9g03616 | 9:14,839,610-14,843,501 | - | C1H9g26033 | CX9g057960 | LOC_Os09g29170 | Os09g0466900 | - | Detail |
| C2H9g18091 | 9:14,845,713-14,849,369 | + | C1H9g25973 | CX9g054948 | LOC_Os09g29190 | Os09g0467100 | - | Detail |
| C2H9g20067 | 9:14,850,287-14,851,446 | + | C1H9g03626 | CX9g057456 | LOC_Os09g29200 | Os09g0467200 | OsGSTU17 | Detail |
| C2H9g19961 | 9:14,851,696-14,854,386 | - | C1H9g25479 | CX9g055174 | LOC_Os09g29210 | Os09g0467300 | - | Detail |
| C2H9g05257 | 9:14,858,868-14,870,050 | - | C1H9g14726 | CX9g057978 | LOC_Os09g29239 | Os09g0467400 | - | Detail |
| C2H9g10935 | 9:14,872,420-14,876,550 | + | C1H9g27360 | CX9g057900 | LOC_Os09g29284 | Os09g0468000 | - | Detail |
| C2H9g09276 | 9:14,879,151-14,879,852 | + | C1H9g09253 | CX9g057900 | LOC_Os09g29284 | Os09g0468000 | - | Detail |
| C2H9g19252 | 9:14,919,500-14,921,105 | + | C1H9g09081 | CX9g056618 | LOC_Os09g29360 | Os09g0468700 | - | Detail |
| C2H9g25811 | 9:14,926,577-14,927,656 | - | C1H9g23244 | CX9g055497 | LOC_Os09g29370 | Os09g0468800 | - | Detail |
| C2H9g23871 | 9:14,928,894-14,930,533 | + | C1H9g22271 | CX9g056285 | LOC_Os09g29380 | Os09g0468900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |