| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27090 | 3:850,028-850,639 | + | C2H3g30074 | CX3g029231 | LOC_Os03g05590 | Os03g0117900 | - | Detail |
| C1H3g15880 | 3:856,310-860,232 | + | C2H3g15234 | CX3g029442 | LOC_Os03g02660 | Os03g0118100 | - | Detail |
| C1H3g16233 | 3:862,627-865,949 | + | C2H3g07784 | CX3g026262 | LOC_Os03g02670 | Os03g0118200 | - | Detail |
| C1H3g13017 | 3:869,189-872,675 | + | C2H3g27804 | CX3g031203 | LOC_Os03g02680 | Os03g0118400 | - | Detail |
| C1H3g16154 | 3:874,883-875,251 | + | C2H3g24680 | CX3g030967 | LOC_Os03g02685 | Os10g0524300 | OsEMSA1 | Detail |
| C1H3g25055 | 3:876,822-879,754 | + | C2H3g24680 | CX3g030967 | LOC_Os03g02690 | Os03g0118600 | - | Detail |
| C1H3g29819 | 3:880,878-881,723 | + | C2H3g19778 | CX3g029478 | LOC_Os03g02700 | Os10g0524500 | NP1, OsNP1 | Detail |
| C1H3g15623 | 3:881,736-883,129 | + | C2H3g28799 | CX3g029478 | LOC_Os03g02700 | Os03g0118700 | - | Detail |
| C1H3g19576 | 3:891,227-896,308 | + | C2H3g12379 | CX3g027174 | LOC_Os03g02710 | Os03g0118800 | - | Detail |
| C1H3g18152 | 3:897,548-900,663 | + | C2H3g28095 | CX3g029720 | LOC_Os03g02720 | Os03g0118900 | - | Detail |
| C1H3g09297 | 3:901,082-904,667 | - | C2H3g05533 | CX3g029588 | LOC_Os03g02730 | Os03g0119000 | - | Detail |
| C1H3g07728 | 3:905,330-909,405 | - | C2H3g14532 | CX3g029171 | LOC_Os03g02740 | Os03g0119100 | - | Detail |
| C1H3g23288 | 3:912,695-914,947 | - | C2H3g09524 | CX3g030706 | LOC_Os03g02750 | Os03g0119300 | - | Detail |
| C1H3g00618 | 3:927,385-955,923 | + | C2H3g19502 | CX3g030646 | LOC_Os03g03610 | Os03g0119500 | CRR1 | Detail |
| C1H3g23255 | 3:956,674-957,933 | + | C2H3g11241 | CX3g025079 | LOC_Os03g02762 | Os03g0119700 | - | Detail |
| C1H3g13459 | 3:960,163-960,474 | + | C2H3g05811 | CX3g028433 | LOC_Os03g02780 | Os03g0119900 | - | Detail |
| C1H3g04574 | 3:969,029-972,980 | + | C2H3g00993 | CX3g026456 | LOC_Os03g02800 | Os03g0119966 | RIM1, ONAC054, ONAC54, NAC54 | Detail |
| C1H3g21463 | 3:974,336-977,534 | + | C2H3g24146 | - | LOC_Os03g02820 | Os03g0120000 | - | Detail |
| C1H3g16632 | 3:977,917-980,796 | - | C2H3g12012 | CX3g031103 | LOC_Os03g02830 | Os03g0120100 | - | Detail |
| C1H3g08934 | 3:982,340-986,225 | - | C2H3g14284 | CX3g026078 | LOC_Os03g02840 | Os03g0120200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g02080 | 2:26,686,966-26,690,409 | + | C1H2g09622 | CX2g022772 | LOC_Os02g47360 | Os02g0702000 | OSOTP51, SSA1 | Detail |
| C2H2g03187 | 2:26,690,587-26,690,919 | - | C1H4g19881 | CX2g022159 | LOC_Os02g47370 | Os02g0702100 | - | Detail |
| C2H2g00977 | 2:26,696,996-26,699,871 | + | C1H2g18788 | CX2g019179 | LOC_Os02g47400 | Os02g0702400 | - | Detail |
| C2H2g26384 | 2:26,701,060-26,709,768 | - | C1H2g17296 | CX2g023268 | LOC_Os02g47410 | Os02g0702500 | - | Detail |
| C2H2g00034 | 2:26,714,460-26,720,775 | - | C1H2g14738 | CX2g020864 | LOC_Os02g47420 | Os02g0702600 | - | Detail |
| C2H2g04827 | 2:26,729,670-26,736,145 | - | C1H2g23661 | CX2g020499 | LOC_Os02g47440 | Os02g0702800 | OsSYP21 | Detail |
| C2H2g13380 | 2:26,739,849-26,740,673 | + | C1H2g10840 | CX2g023044 | LOC_Os02g47450 | Os02g0703300 | - | Detail |
| C2H2g24088 | 2:26,753,630-26,755,553 | + | C1H2g06866 | CX2g021944 | LOC_Os02g45280 | Os02g0703600 | OsABA8ox1, CYP707A5 | Detail |
| C2H2g17501 | 2:26,765,805-26,766,329 | - | C1H2g25877 | CX2g023081 | LOC_Os02g47490 | Os02g0703800 | - | Detail |
| C2H2g26119 | 2:26,767,282-26,770,440 | + | C1H2g27896 | CX2g022994 | LOC_Os02g47500 | Os02g0703900 | - | Detail |
| C2H2g15070 | 2:26,770,724-26,772,592 | - | - | - | LOC_Os02g47510 | Os02g0704000 | OsCCD4a, OsNCED1 | Detail |
| C2H2g28790 | 2:26,783,252-26,787,937 | - | C1H2g28522 | CX2g020240 | LOC_Os02g47560 | Os02g0704300 | OsDNA2_6 | Detail |
| C2H2g08817 | 2:26,791,354-26,794,394 | + | C1H2g16636 | CX2g021465 | LOC_Os02g47570 | Os02g0704500 | - | Detail |
| C2H2g10092 | 2:26,794,932-26,798,822 | - | - | CX2g023515 | LOC_Os02g47580 | Os02g0704600 | - | Detail |
| C2H2g14274 | 2:26,800,069-26,804,443 | + | C1H2g06692 | CX2g019220 | LOC_Os02g47590 | Os02g0704800 | - | Detail |
| C2H2g01483 | 2:26,805,227-26,810,278 | - | C1H2g18129 | CX2g024385 | LOC_Os02g47600 | Os02g0704900 | - | Detail |
| C2H2g24836 | 2:26,811,987-26,816,190 | - | C1H2g09314 | CX2g023079 | LOC_Os02g47605 | Os02g0704966 | - | Detail |
| C2H2g07681 | 2:26,816,280-26,820,804 | - | C1H2g07748 | CX2g020107 | LOC_Os02g47610 | Os02g0705000 | - | Detail |
| C2H2g27957 | 2:26,822,687-26,824,919 | - | C1H2g06203 | CX2g024556 | LOC_Os02g47620 | Os02g0705100 | - | Detail |
| C2H2g29851 | 2:26,832,630-26,836,180 | + | C1H2g14377 | CX2g023714 | LOC_Os02g47640 | Os02g0705300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |