| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08557 | 1:728,898-736,974 | - | C2H1g24458 | CX1g000582 | LOC_Os01g02760 | Os01g0117000 | - | Detail |
| C1H1g25607 | 1:732,662-736,132 | + | C2H1g22757 | CX1g004864 | LOC_Os01g02770 | Os01g0117100 | - | Detail |
| C1H1g16172 | 1:740,462-741,538 | - | C2H1g24458 | CX1g004882 | LOC_Os01g02780 | Os01g0117200 | - | Detail |
| C1H1g21959 | 1:747,733-751,364 | + | C2H1g00354 | CX1g004864 | LOC_Os01g02790 | Os01g0117266 | - | Detail |
| C1H1g11145 | 1:755,141-759,474 | - | C2H1g01348 | CX1g004882 | LOC_Os01g02800 | Os01g0117400 | - | Detail |
| C1H1g14120 | 1:786,312-787,277 | + | C2H1g22757 | CX1g004864 | LOC_Os01g02810 | Os01g0117500 | - | Detail |
| C1H1g24004 | 1:789,733-793,496 | - | C2H1g30217 | CX1g007103 | LOC_Os01g02860 | - | - | Detail |
| C1H1g14169 | 1:796,717-798,943 | + | C2H1g15563 | CX1g006137 | LOC_Os01g02870 | Os01g0117900 | - | Detail |
| C1H1g19036 | 1:802,243-805,758 | + | C2H1g29553 | CX1g006349 | LOC_Os01g02880 | Os01g0118000 | - | Detail |
| C1H1g31307 | 1:806,706-809,793 | + | - | - | - | Os01g0554150 | - | Detail |
| C1H1g29474 | 1:810,660-820,851 | + | C2H1g08229 | CX1g005801 | LOC_Os01g02884 | Os01g0118100 | - | Detail |
| C1H1g26055 | 1:835,901-842,476 | + | C2H1g02733 | - | LOC_Os01g02890 | Os01g0118300 | SUI1, OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1 | Detail |
| C1H1g13587 | 1:846,726-849,632 | - | C2H1g25728 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| C1H1g19340 | 1:863,703-867,080 | - | C2H1g24887 | - | LOC_Os01g02910 | Os01g0118600 | - | Detail |
| C1H1g28376 | 1:872,069-874,831 | - | C2H1g16133 | - | LOC_Os01g02920 | Os01g0118700 | - | Detail |
| C1H1g06299 | 1:878,642-881,826 | - | C2H1g28060 | - | LOC_Os01g02930 | Os01g0119000 | - | Detail |
| C1H1g29708 | 1:890,429-894,356 | - | C2H1g09306 | - | LOC_Os01g02940 | Os01g0119100 | - | Detail |
| C1H1g13986 | 1:900,511-901,032 | + | C2H1g08550 | - | - | - | - | Detail |
| C1H1g16487 | 1:903,386-903,544 | - | C2H2g06716 | CX2g022437 | LOC_Os10g02680 | Os10g0116300 | - | Detail |
| C1H1g01366 | 1:909,501-910,981 | - | C2H1g12790 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g16494 | 5:2,395,316-2,397,937 | + | C1H5g12513 | CX5g040805 | LOC_Os05g05690 | Os05g0149500 | - | Detail |
| C2H5g25711 | 5:2,398,498-2,405,119 | - | C1H5g08311 | CX5g038928 | LOC_Os05g05700 | Os05g0149600 | OsCUL1-2 | Detail |
| C2H5g15844 | 5:2,410,866-2,416,815 | + | C1H5g22304 | CX5g038404 | LOC_Os05g05710 | Os05g0149800 | - | Detail |
| C2H5g18610 | 5:2,417,654-2,423,555 | + | C1H5g26443 | CX5g036871 | LOC_Os05g05720 | Os05g0149900 | - | Detail |
| C2H5g00389 | 5:2,427,101-2,427,911 | - | C1H5g12097 | CX5g037725 | - | - | - | Detail |
| C2H5g17068 | 5:2,429,760-2,432,603 | - | C1H5g19233 | CX5g039274 | LOC_Os05g05740 | Os05g0150000 | HTH5, PLPHP | Detail |
| C2H5g22435 | 5:2,436,046-2,445,994 | + | C1H5g21935 | CX5g036676 | LOC_Os05g05780 | Os05g0150300 | OsCHR727, CHR727 | Detail |
| C2H5g24081 | 5:2,446,403-2,450,978 | - | C1H5g05513 | CX5g040936 | LOC_Os05g05790 | Os05g0150400 | OsDRB3 | Detail |
| C2H5g02158 | 5:2,454,497-2,460,286 | - | C1H5g15222 | CX5g037178 | LOC_Os05g05800 | Os05g0150500 | TIR1, OsTIR1 | Detail |
| C2H5g00353 | 5:2,468,439-2,475,338 | - | C1H5g02062 | CX5g037551 | LOC_Os05g05810 | Os05g0150600 | OsRecQsim | Detail |
| C2H5g07952 | 5:2,478,110-2,480,103 | + | C1H5g14118 | CX5g037127 | LOC_Os05g05820 | Os05g0150733 | - | Detail |
| C2H5g03107 | 5:2,487,595-2,488,250 | + | C1H5g05063 | CX5g038863 | - | - | - | Detail |
| C2H5g01035 | 5:2,489,406-2,491,762 | + | C1H5g29614 | CX5g038779 | LOC_Os05g05830 | Os05g0150800 | - | Detail |
| C2H5g22602 | 5:2,491,846-2,495,963 | - | C1H5g12853 | CX5g040193 | LOC_Os05g05840 | Os05g0150900 | - | Detail |
| C2H5g00665 | 5:2,499,333-2,508,472 | - | C1H5g17386 | CX5g038309 | LOC_Os05g05860 | Os05g0151000 | - | Detail |
| C2H5g27389 | 5:2,510,435-2,511,543 | + | C1H5g18065 | CX5g039485 | LOC_Os05g05920 | Os05g0151100 | - | Detail |
| C2H5g27407 | 5:2,514,071-2,515,859 | - | C1H5g06297 | CX5g039472 | LOC_Os05g05940 | Os05g0151300 | - | Detail |
| C2H5g21053 | 5:2,516,863-2,521,275 | - | C1H5g06792 | CX5g040146 | LOC_Os05g05950 | Os05g0151400 | - | Detail |
| C2H5g20384 | 5:2,531,085-2,540,050 | + | C1H5g01718 | CX5g040030 | LOC_Os05g05980 | Os01g0530366 | - | Detail |
| C2H5g23909 | 5:2,558,237-2,558,773 | + | - | CX5g039592 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |