| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17381 | 3:91,885-92,302 | - | C2H3g00405 | CX3g025489 | LOC_Os03g01140 | Os03g0101000 | - | Detail |
| C1H3g21267 | 3:93,891-97,768 | + | C2H3g18212 | CX3g029599 | LOC_Os03g01150 | Os03g0101100 | - | Detail |
| C1H3g29573 | 3:97,673-101,671 | - | C2H3g24205 | CX3g030198 | LOC_Os03g01160 | Os03g0101200 | - | Detail |
| C1H3g22019 | 3:105,501-108,460 | - | C2H3g02388 | CX3g030753 | LOC_Os03g01170 | Os03g0101300 | - | Detail |
| C1H3g22515 | 3:110,566-112,211 | - | C2H3g13566 | CX3g030969 | LOC_Os03g01180 | Os03g0101500 | - | Detail |
| C1H3g10161 | 3:112,505-122,141 | - | C2H3g27968 | CX3g028165 | LOC_Os03g01190 | Os03g0101600 | - | Detail |
| C1H3g10633 | 3:127,172-129,107 | + | C2H3g26911 | CX3g025690 | LOC_Os03g01210 | Os03g0101800 | - | Detail |
| C1H3g06917 | 3:131,198-135,101 | + | C2H3g12060 | CX3g029047 | LOC_Os03g01216 | Os03g0101900 | - | Detail |
| C1H3g00218 | 3:136,057-139,222 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01222 | Os03g0102100 | - | Detail |
| C1H3g25020 | 3:139,497-139,992 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01230 | Os03g0102200 | - | Detail |
| C1H3g05989 | 3:144,120-145,453 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102300 | - | Detail |
| C1H3g16074 | 3:152,867-154,906 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102333 | - | Detail |
| C1H3g05608 | 3:156,546-160,521 | + | C2H3g07325 | CX3g029938 | LOC_Os03g01240 | Os03g0102366 | - | Detail |
| C1H3g25301 | 3:160,940-166,247 | - | C2H3g23495 | CX3g027923 | LOC_Os03g01250 | Os03g0102400 | - | Detail |
| C1H3g20737 | 3:169,996-170,856 | - | C2H3g09146 | CX3g028399 | LOC_Os03g01260 | Os03g0102500 | - | Detail |
| C1H3g18000 | 3:175,530-177,277 | + | C2H3g19463 | CX3g030913 | LOC_Os03g01270 | Os03g0102700 | OsEXPB7 | Detail |
| C1H3g03491 | 3:185,959-187,024 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g16425 | 3:188,066-189,290 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g01568 | 3:193,134-193,559 | + | C2H3g24645 | CX3g025864 | LOC_Os03g01300 | Os03g0103100 | - | Detail |
| C1H3g18184 | 3:206,204-206,818 | + | C2H3g27129 | CX3g025864 | LOC_Os03g01320 | Os03g0103300 | qLTG-3-1(t), qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28190 | 9:9,609,159-9,613,593 | - | C1H9g01685 | CX9g055402 | LOC_Os09g18320 | Os09g0352400 | - | Detail |
| C2H9g21101 | 9:9,620,738-9,621,136 | - | - | - | - | - | - | Detail |
| C2H9g20351 | 9:9,623,036-9,623,672 | - | - | CX9g056083 | - | - | - | Detail |
| C2H9g03152 | 9:9,623,705-9,623,950 | + | - | CX9g055139 | - | - | - | Detail |
| C2H9g30412 | 9:9,632,947-9,641,239 | - | C1H9g17851 | CX9g057843 | LOC_Os09g18360 | Os09g0353200 | - | Detail |
| C2H9g08214 | 9:9,653,834-9,656,647 | + | C1H9g04955 | CX9g055425 | LOC_Os09g18390 | Os09g0353400 | - | Detail |
| C2H9g27520 | 9:9,666,615-9,667,415 | + | C1H9g29305 | CX9g055425 | LOC_Os09g18520 | Os09g0354300 | - | Detail |
| C2H9g11760 | 9:9,670,309-9,675,875 | + | C1H9g07758 | CX9g055425 | LOC_Os09g18450 | Os09g0353700 | - | Detail |
| C2H9g08714 | 9:9,678,511-9,680,256 | + | C1H9g19178 | CX9g055968 | LOC_Os09g18450 | Os09g0354100 | - | Detail |
| C2H9g09770 | 9:9,691,099-9,693,155 | - | C1H9g24256 | CX9g056896 | LOC_Os09g18530 | Os09g0355400 | - | Detail |
| C2H9g15417 | 9:9,694,571-9,697,027 | - | C1H9g24532 | CX9g056896 | LOC_Os09g18540 | Os09g0349600 | - | Detail |
| C2H9g18054 | 9:9,700,782-9,700,982 | - | C1H12g16817 | CX9g055807 | - | - | - | Detail |
| C2H9g16060 | 9:9,703,071-9,704,331 | - | C1H9g06855 | CX9g055165 | LOC_Os09g18620 | Os09g0356200 | - | Detail |
| C2H9g17839 | 9:9,734,592-9,736,162 | + | C1H9g24532 | CX9g055165 | LOC_Os09g18540 | Os09g0358700 | OsCBM1, OsMRLP15 | Detail |
| C2H9g18289 | 9:9,741,700-9,743,725 | + | C1H9g24256 | CX9g056896 | LOC_Os09g18530 | Os09g0348600 | - | Detail |
| C2H9g01606 | 9:9,747,298-9,750,186 | - | C1H9g17851 | CX9g057279 | LOC_Os09g19140 | Os09g0356000 | - | Detail |
| C2H9g04789 | 9:9,752,412-9,756,190 | - | C1H9g30812 | CX9g057279 | LOC_Os09g19140 | Os09g0356000 | - | Detail |
| C2H9g12232 | 9:9,769,247-9,778,995 | + | C1H9g15807 | CX9g055760 | LOC_Os09g18530 | Os09g0356200 | - | Detail |
| C2H9g05573 | 9:9,769,680-9,779,721 | - | - | - | - | - | - | Detail |
| C2H9g05612 | 9:9,781,558-9,782,037 | + | - | CX9g055923 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |