| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17381 | 3:91,885-92,302 | - | C2H3g00405 | CX3g025489 | LOC_Os03g01140 | Os03g0101000 | - | Detail |
| C1H3g21267 | 3:93,891-97,768 | + | C2H3g18212 | CX3g029599 | LOC_Os03g01150 | Os03g0101100 | - | Detail |
| C1H3g29573 | 3:97,673-101,671 | - | C2H3g24205 | CX3g030198 | LOC_Os03g01160 | Os03g0101200 | - | Detail |
| C1H3g22019 | 3:105,501-108,460 | - | C2H3g02388 | CX3g030753 | LOC_Os03g01170 | Os03g0101300 | - | Detail |
| C1H3g22515 | 3:110,566-112,211 | - | C2H3g13566 | CX3g030969 | LOC_Os03g01180 | Os03g0101500 | - | Detail |
| C1H3g10161 | 3:112,505-122,141 | - | C2H3g27968 | CX3g028165 | LOC_Os03g01190 | Os03g0101600 | - | Detail |
| C1H3g10633 | 3:127,172-129,107 | + | C2H3g26911 | CX3g025690 | LOC_Os03g01210 | Os03g0101800 | - | Detail |
| C1H3g06917 | 3:131,198-135,101 | + | C2H3g12060 | CX3g029047 | LOC_Os03g01216 | Os03g0101900 | - | Detail |
| C1H3g00218 | 3:136,057-139,222 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01222 | Os03g0102100 | - | Detail |
| C1H3g25020 | 3:139,497-139,992 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01230 | Os03g0102200 | - | Detail |
| C1H3g05989 | 3:144,120-145,453 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102300 | - | Detail |
| C1H3g16074 | 3:152,867-154,906 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102333 | - | Detail |
| C1H3g05608 | 3:156,546-160,521 | + | C2H3g07325 | CX3g029938 | LOC_Os03g01240 | Os03g0102366 | - | Detail |
| C1H3g25301 | 3:160,940-166,247 | - | C2H3g23495 | CX3g027923 | LOC_Os03g01250 | Os03g0102400 | - | Detail |
| C1H3g20737 | 3:169,996-170,856 | - | C2H3g09146 | CX3g028399 | LOC_Os03g01260 | Os03g0102500 | - | Detail |
| C1H3g18000 | 3:175,530-177,277 | + | C2H3g19463 | CX3g030913 | LOC_Os03g01270 | Os03g0102700 | OsEXPB7 | Detail |
| C1H3g03491 | 3:185,959-187,024 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g16425 | 3:188,066-189,290 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g01568 | 3:193,134-193,559 | + | C2H3g24645 | CX3g025864 | LOC_Os03g01300 | Os03g0103100 | - | Detail |
| C1H3g18184 | 3:206,204-206,818 | + | C2H3g27129 | CX3g025864 | LOC_Os03g01320 | Os03g0103300 | qLTG-3-1(t), qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g06495 | 7:20,809,667-20,814,450 | + | C1H7g21897 | CX7g047051 | LOC_Os07g42380 | Os07g0615400 | - | Detail |
| C2H7g18721 | 7:20,815,438-20,816,176 | - | C1H7g24184 | CX7g046608 | LOC_Os07g42390 | Os07g0615500 | - | Detail |
| C2H7g04089 | 7:20,818,945-20,821,791 | - | C1H7g12920 | CX7g048008 | LOC_Os07g42395 | Os07g0615800 | - | Detail |
| C2H7g13124 | 7:20,821,880-20,825,465 | + | C1H7g15813 | CX7g049223 | LOC_Os07g42400 | Os07g0615900 | OsGATA23, OsGATA23b | Detail |
| C2H7g27194 | 7:20,831,894-20,839,861 | + | C1H7g21663 | CX7g048144 | LOC_Os07g42410 | Os07g0616000 | - | Detail |
| C2H7g23964 | 7:20,840,826-20,846,494 | - | C1H7g22153 | CX7g050288 | LOC_Os07g42420 | Os07g0616200 | - | Detail |
| C2H7g14238 | 7:20,855,952-20,860,539 | + | C1H7g08492 | CX7g047603 | LOC_Os07g42440 | Os07g0616500 | - | Detail |
| C2H7g12593 | 7:20,861,143-20,862,991 | - | C1H7g18252 | CX7g046961 | LOC_Os07g42450 | Os07g0616600 | - | Detail |
| C2H7g18106 | 7:20,879,873-20,881,440 | - | C1H7g15200 | CX7g050328 | - | - | - | Detail |
| C2H7g30322 | 7:20,882,443-20,886,702 | + | C1H7g14836 | CX7g049372 | LOC_Os07g42490 | Os07g0616800 | Sus3, OsSUS3, Apq1 | Detail |
| C2H7g24983 | 7:20,886,710-20,887,368 | - | C1H7g08667 | - | - | - | - | Detail |
| C2H7g01243 | 7:20,887,610-20,891,046 | + | C1H7g25453 | CX7g050323 | LOC_Os07g42500 | Os07g0616900 | - | Detail |
| C2H7g20929 | 7:20,892,514-20,894,338 | - | C1H7g19704 | CX7g046895 | LOC_Os07g42510 | Os07g0617000 | - | Detail |
| C2H7g27687 | 7:20,919,654-20,924,300 | - | C1H7g31198 | CX7g049149 | LOC_Os07g42600 | Os07g0617800 | - | Detail |
| C2H7g24512 | 7:20,932,217-20,933,023 | - | C1H7g23559 | CX7g047398 | LOC_Os07g42610 | Os07g0618000 | - | Detail |
| C2H7g09078 | 7:20,942,457-20,948,710 | + | C1H7g19417 | CX7g050156 | LOC_Os07g42626 | Os07g0618400 | - | Detail |
| C2H7g03991 | 7:20,949,850-20,952,226 | + | C1H7g25200 | CX7g047535 | LOC_Os07g42632 | Os07g0618500 | - | Detail |
| C2H7g14929 | 7:20,953,914-20,954,640 | + | - | - | - | - | - | Detail |
| C2H7g00142 | 7:20,956,239-20,959,483 | + | C1H7g20717 | CX7g047535 | LOC_Os07g42640 | Os07g0618600 | - | Detail |
| C2H7g13487 | 7:20,960,924-20,964,384 | + | C1H7g24523 | CX7g046248 | LOC_Os07g42650 | Os07g0618700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |