| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g05302 | 2:31,520,431-31,522,927 | - | C2H2g04085 | CX2g019099 | LOC_Os02g56630 | Os02g0811200 | - | Detail |
| C1H2g01711 | 2:31,528,931-31,530,485 | - | C2H2g14829 | CX2g024895 | LOC_Os02g56680 | Os02g0811400 | - | Detail |
| C1H2g25927 | 2:31,538,064-31,539,587 | - | C2H2g09964 | CX2g023560 | LOC_Os02g56480 | Os02g0809100 | - | Detail |
| C1H2g00539 | 2:31,556,493-31,558,714 | + | C2H2g05475 | CX2g020953 | LOC_Os02g56500 | Os02g0809500 | OsSEC24 | Detail |
| C1H2g03941 | 2:31,558,737-31,559,080 | + | C2H2g05475 | CX2g020953 | LOC_Os02g56500 | Os02g0809500 | OsSEC24 | Detail |
| C1H2g08370 | 2:31,569,626-31,575,153 | + | C2H2g26800 | CX2g019552 | LOC_Os02g56510 | Os02g0809800 | PHO1;2, OsPHO1;2 | Detail |
| C1H2g13536 | 2:31,575,169-31,578,767 | - | C2H2g22393 | CX2g021231 | LOC_Os02g56520 | Os02g0809900 | - | Detail |
| C1H2g21189 | 2:31,579,867-31,584,046 | - | C2H2g05657 | CX2g020383 | LOC_Os02g56530 | Os02g0810100 | - | Detail |
| C1H2g07640 | 2:31,589,590-31,593,808 | + | C2H2g09102 | CX2g023309 | LOC_Os02g56540 | Os02g0810200 | STD1 | Detail |
| C1H2g31061 | 2:31,594,689-31,597,714 | + | C2H2g09184 | CX2g021152 | LOC_Os02g56550 | Os02g0810300 | OsABCI15 | Detail |
| C1H2g29463 | 2:31,601,732-31,610,383 | + | C2H2g08532 | CX2g023904 | LOC_Os02g56560 | Os02g0810400 | - | Detail |
| C1H2g17936 | 2:31,611,286-31,615,012 | + | C2H2g16022 | CX2g022596 | LOC_Os02g56570 | Os02g0810500 | - | Detail |
| C1H2g20971 | 2:31,622,137-31,622,656 | + | C2H2g16022 | CX2g024714 | LOC_Os02g56580 | Os02g0810600 | - | Detail |
| C1H2g28748 | 2:31,635,972-31,638,279 | + | C2H2g20484 | CX2g020604 | LOC_Os02g56600 | Os02g0810900 | - | Detail |
| C1H2g13041 | 2:31,670,549-31,671,056 | - | C2H2g14230 | - | - | Os02g0811101 | - | Detail |
| C1H2g00270 | 2:31,673,007-31,673,414 | + | C2H2g01916 | - | - | - | - | Detail |
| C1H2g11260 | 2:31,676,263-31,680,124 | + | C2H2g05949 | CX2g020564 | LOC_Os02g56420 | Os02g0807900 | - | Detail |
| C1H2g25312 | 2:31,715,102-31,717,700 | + | C2H2g04085 | CX2g019099 | LOC_Os02g56630 | Os02g0811200 | - | Detail |
| C1H2g05066 | 2:31,726,456-31,727,868 | + | C2H2g14829 | CX2g024895 | LOC_Os02g56680 | Os02g0811400 | - | Detail |
| C1H2g24089 | 2:31,732,383-31,733,839 | + | C2H2g21626 | CX2g022856 | LOC_Os02g56690 | Os02g0811800 | OsCCR10 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g03508 | 5:7,583,049-7,583,942 | - | C1H5g21179 | CX5g038349 | LOC_Os05g15770 | Os05g0247100 | DIP3, XIP, OsHI-XIP | Detail |
| C2H5g09723 | 5:7,630,074-7,639,532 | - | C1H5g04227 | CX5g040966 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| C2H5g16380 | 5:7,655,551-7,657,410 | - | C1H5g29560 | CX5g038055 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| C2H5g23841 | 5:7,670,803-7,671,060 | - | C1H5g10784 | CX5g038858 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| C2H5g02175 | 5:7,695,276-7,697,536 | - | C1H5g29560 | CX5g039101 | LOC_Os05g16100 | Os05g0249800 | - | Detail |
| C2H5g15350 | 5:7,707,412-7,710,911 | - | C1H5g23916 | CX5g039101 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| C2H5g06835 | 5:7,715,435-7,719,297 | - | C1H5g17383 | CX5g039101 | LOC_Os05g16240 | Os05g0250200 | - | Detail |
| C2H5g11862 | 5:7,723,279-7,726,185 | - | C1H5g19855 | CX5g041055 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g27100 | 5:7,736,709-7,737,431 | - | - | - | - | - | - | Detail |
| C2H5g08541 | 5:7,756,996-7,758,426 | - | - | CX5g041082 | - | - | - | Detail |
| C2H5g10190 | 5:7,761,947-7,765,438 | - | C1H5g18798 | CX5g038245 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g00039 | 5:7,788,239-7,791,656 | - | C1H5g13669 | - | - | - | - | Detail |
| C2H5g10863 | 5:7,791,689-7,792,726 | - | C1H5g13669 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C2H5g12394 | 5:7,796,358-7,797,614 | - | C1H5g11478 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C2H5g03213 | 5:7,799,407-7,803,760 | + | C1H5g13415 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C2H5g18069 | 5:7,804,814-7,808,658 | + | C1H5g25482 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C2H5g11253 | 5:7,812,460-7,816,343 | + | C1H5g22880 | CX5g037603 | - | - | - | Detail |
| C2H5g17103 | 5:7,813,545-7,819,371 | - | C1H5g03577 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C2H5g24772 | 5:7,822,367-7,827,353 | - | C1H5g13508 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C2H5g01822 | 5:7,838,754-7,840,413 | - | C1H5g26814 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |