| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g26130 | 2:29,819,701-29,819,964 | - | C2H2g03730 | CX2g024189 | LOC_Os02g53250 | Os02g0772200 | - | Detail |
| C1H2g11093 | 2:29,821,943-29,824,235 | + | C2H2g25549 | CX2g024622 | LOC_Os02g53260 | Os02g0772300 | - | Detail |
| C1H2g09184 | 2:29,825,930-29,835,235 | + | C2H2g06676 | CX2g021573 | LOC_Os02g53270 | Os02g0772500 | - | Detail |
| C1H2g18055 | 2:29,835,934-29,838,839 | - | C2H2g12559 | CX2g020239 | LOC_Os02g53280 | Os02g0772600 | - | Detail |
| C1H2g02313 | 2:29,866,850-29,867,724 | + | C2H2g06283 | CX2g024470 | LOC_Os02g53320 | Os02g0773200 | - | Detail |
| C1H2g08102 | 2:29,868,166-29,871,619 | - | C2H2g25592 | CX2g019558 | LOC_Os02g53330 | Os02g0773300 | OsDCD1 | Detail |
| C1H2g25749 | 2:29,871,837-29,881,439 | + | C2H2g27938 | CX2g021420 | LOC_Os02g53340 | Os02g0773400 | OsCNGC12 | Detail |
| C1H2g17806 | 2:29,888,125-29,888,723 | - | C2H2g08525 | CX2g023373 | LOC_Os02g53360 | Os02g0773600 | - | Detail |
| C1H2g25824 | 2:29,892,945-29,895,453 | - | C2H2g16066 | CX2g019915 | LOC_Os02g53380 | Os02g0773732 | - | Detail |
| C1H2g03792 | 2:29,908,072-29,909,694 | + | C2H2g28063 | CX2g018856 | LOC_Os02g53400 | Os02g0774100 | - | Detail |
| C1H2g01365 | 2:29,910,219-29,910,530 | - | C2H2g10384 | CX2g024637 | LOC_Os02g53410 | Os02g0774200 | - | Detail |
| C1H2g01399 | 2:29,912,219-29,916,483 | - | C2H2g07217 | CX2g021368 | LOC_Os02g53420 | Os02g0774300 | - | Detail |
| C1H2g13274 | 2:29,918,383-29,920,386 | - | C2H2g12161 | CX2g019046 | LOC_Os02g53430 | Os02g0774500 | - | Detail |
| C1H2g22474 | 2:29,925,211-29,928,382 | + | C2H2g22967 | CX2g024874 | - | Os02g0774800 | - | Detail |
| C1H2g06446 | 2:29,933,609-29,933,800 | - | C2H2g15356 | - | - | - | - | Detail |
| C1H2g29192 | 2:29,940,494-29,942,692 | + | C2H2g06998 | CX2g024255 | LOC_Os02g53490 | Os02g0775100 | MTP8.2 | Detail |
| C1H2g06460 | 2:29,942,904-29,947,226 | - | C2H2g11710 | CX2g020145 | LOC_Os02g53500 | Os02g0775200 | OsRFC3 | Detail |
| C1H2g29744 | 2:29,950,416-29,960,188 | - | C2H2g19841 | CX2g019424 | LOC_Os02g53520 | Os02g0775400 | K16 | Detail |
| C1H2g17972 | 2:29,986,454-29,986,744 | - | C2H2g00181 | CX2g023640 | LOC_Os02g53580 | Os02g0775900 | - | Detail |
| C1H2g14913 | 2:29,987,760-29,988,713 | - | C2H2g15784 | CX2g023640 | LOC_Os02g53580 | Os02g0775900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g02435 | 4:26,718,889-26,720,819 | + | C1H4g11906 | CX4g031886 | LOC_Os04g52361 | Os04g0613500 | - | Detail |
| C2H4g14262 | 4:26,724,353-26,728,915 | - | C1H4g03528 | CX4g033920 | LOC_Os04g52370 | Os04g0613700 | UAP2 | Detail |
| C2H4g30596 | 4:26,734,579-26,740,509 | - | C1H4g12683 | CX4g033615 | LOC_Os04g52380 | Os04g0613800 | - | Detail |
| C2H4g10814 | 4:26,743,828-26,748,949 | - | C1H4g15444 | CX4g032046 | LOC_Os04g52390 | Os04g0613900 | - | Detail |
| C2H4g02940 | 4:26,754,868-26,757,310 | + | C1H4g09621 | CX4g033364 | LOC_Os04g52400 | Os04g0614000 | - | Detail |
| C2H4g14823 | 4:26,758,946-26,760,350 | + | C1H4g18002 | CX4g033138 | LOC_Os04g52410 | Os04g0614100 | - | Detail |
| C2H4g28997 | 4:26,763,313-26,766,976 | + | C1H4g00068 | CX4g031526 | LOC_Os04g52420 | Os04g0616900 | - | Detail |
| C2H4g06699 | 4:26,770,988-26,772,512 | + | C1H4g05036 | - | - | Os04g0614300 | - | Detail |
| C2H4g17218 | 4:26,775,472-26,781,526 | + | C1H4g02712 | CX4g035904 | LOC_Os04g52450 | Os04g0614600 | - | Detail |
| C2H4g10708 | 4:26,790,164-26,799,292 | + | C1H4g17515 | CX4g035957 | LOC_Os04g52460 | Os04g0614700 | - | Detail |
| C2H4g23243 | 4:26,811,933-26,816,868 | + | C1H4g20369 | CX4g036351 | LOC_Os04g52479 | Os04g0615000 | NAL1, nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4 | Detail |
| C2H4g24013 | 4:26,817,995-26,822,447 | + | C1H4g29702 | CX4g034949 | LOC_Os04g52500 | Os04g0615100 | - | Detail |
| C2H4g04550 | 4:26,823,039-26,823,723 | - | C1H4g06180 | - | LOC_Os04g52504 | Os04g0615200 | - | Detail |
| C2H4g11553 | 4:26,826,153-26,829,725 | + | C1H4g16195 | CX4g031653 | LOC_Os04g52520 | Os04g0615500 | - | Detail |
| C2H4g12331 | 4:26,830,483-26,831,606 | + | C1H4g22078 | CX4g031949 | LOC_Os04g52530 | Os04g0615600 | - | Detail |
| C2H4g15420 | 4:26,843,505-26,848,072 | + | C1H4g15848 | CX4g034962 | LOC_Os04g52540 | Os04g0615700 | OsAGO2 | Detail |
| C2H4g00576 | 4:26,849,148-26,854,139 | + | C1H4g23171 | CX4g031812 | LOC_Os04g52550 | Os04g0615800 | - | Detail |
| C2H4g30305 | 4:26,854,437-26,858,817 | - | C1H4g27864 | CX4g035991 | LOC_Os04g52560 | Os04g0615900 | - | Detail |
| C2H4g12428 | 4:26,857,632-26,858,214 | + | - | - | - | - | - | Detail |
| C2H4g21361 | 4:26,858,288-26,858,792 | + | - | - | - | Os04g0615850 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |