| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g08973 | 2:29,486,516-29,488,110 | - | C2H2g29404 | CX2g021489 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| C1H2g26635 | 2:29,491,640-29,492,317 | - | C2H2g24763 | CX2g019501 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| C1H2g13987 | 2:29,492,995-29,498,859 | - | C2H2g20003 | CX2g022397 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| C1H2g23770 | 2:29,505,104-29,506,173 | + | C2H2g16702 | CX2g019269 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| C1H2g16420 | 2:29,508,096-29,513,216 | - | C2H2g14916 | CX2g021391 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| C1H2g22906 | 2:29,514,765-29,516,017 | - | C2H2g08910 | CX2g023223 | LOC_Os02g52800 | - | - | Detail |
| C1H2g21062 | 2:29,516,257-29,516,906 | - | C2H2g30296 | CX2g023223 | LOC_Os02g52800 | Os02g0766900 | - | Detail |
| C1H2g20452 | 2:29,517,910-29,525,678 | - | C2H2g10227 | CX2g024302 | LOC_Os02g52810 | Os02g0767000 | - | Detail |
| C1H2g09699 | 2:29,529,136-29,533,815 | + | C2H2g03870 | CX2g022681 | LOC_Os02g52820 | Os02g0767100 | - | Detail |
| C1H2g10695 | 2:29,534,390-29,537,933 | - | C2H2g04249 | CX2g018835 | LOC_Os02g52830 | Os02g0767200 | - | Detail |
| C1H2g17405 | 2:29,546,391-29,546,630 | - | C2H2g14519 | CX2g023288 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| C1H2g09946 | 2:29,546,636-29,547,570 | - | C2H2g14519 | CX2g023288 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| C1H2g24330 | 2:29,548,613-29,551,351 | - | C2H2g22142 | CX2g019076 | LOC_Os02g52850 | Os02g0767400 | SDRLK-59 | Detail |
| C1H2g03367 | 2:29,554,780-29,558,698 | - | C2H2g08643 | CX2g023311 | LOC_Os02g52860 | Os02g0767500 | - | Detail |
| C1H2g00086 | 2:29,560,116-29,561,132 | + | C2H2g01609 | CX2g020134 | LOC_Os02g52870 | Os02g0767600 | - | Detail |
| C1H2g22835 | 2:29,561,938-29,565,873 | - | C2H2g28311 | CX2g019177 | LOC_Os02g52880 | Os02g0767700 | - | Detail |
| C1H2g13024 | 2:29,586,012-29,586,637 | + | C2H2g16642 | CX2g020174 | LOC_Os02g52900 | Os02g0767900 | - | Detail |
| C1H2g31571 | 2:29,588,716-29,590,374 | - | C2H2g15864 | CX2g023130 | LOC_Os02g52910 | Os02g0768000 | - | Detail |
| C1H2g24818 | 2:29,591,237-29,593,905 | - | C2H2g21836 | CX2g024813 | LOC_Os02g52920 | Os02g0768200 | - | Detail |
| C1H2g14907 | 2:29,596,790-29,599,243 | - | C2H2g10491 | CX2g021956 | LOC_Os02g52930 | Os02g0768300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g28563 | 1:12,649,509-12,650,534 | - | C1H1g17593 | CX1g005641 | LOC_Os03g29584 | Os03g0409600 | - | Detail |
| C2H1g15011 | 1:12,652,097-12,661,328 | - | C1H1g31563 | CX1g006951 | LOC_Os01g25189 | Os01g0354200 | - | Detail |
| C2H1g21879 | 1:12,670,348-12,674,346 | + | C1H1g07040 | CX1g002132 | LOC_Os01g25240 | Os01g0354700 | - | Detail |
| C2H1g17747 | 1:12,700,271-12,701,344 | + | C1H1g00208 | CX1g002294 | LOC_Os01g25280 | Os01g0355250 | - | Detail |
| C2H1g16578 | 1:12,713,828-12,725,294 | - | C1H1g26223 | CX1g005915 | LOC_Os01g25320 | Os01g0355500 | - | Detail |
| C2H1g07562 | 1:12,726,138-12,729,512 | - | C1H6g30929 | - | - | Os07g0248900 | - | Detail |
| C2H1g00764 | 1:12,730,952-12,731,815 | + | C1H1g04484 | CX1g003598 | - | - | - | Detail |
| C2H1g03083 | 1:12,740,199-12,750,980 | + | C1H1g04297 | CX1g006277 | LOC_Os01g25330 | Os01g0355600 | - | Detail |
| C2H1g27635 | 1:12,791,521-12,796,136 | - | C1H1g19528 | CX1g006683 | LOC_Os01g25370 | Os01g0355900 | OsELS1, OsELS1.3 | Detail |
| C2H1g11601 | 1:12,816,032-12,838,182 | - | C1H1g25404 | CX1g006558 | LOC_Os01g25386 | Os01g0356400 | - | Detail |
| C2H1g19253 | 1:12,865,549-12,871,808 | - | C1H1g30996 | CX1g001500 | LOC_Os01g25440 | Os01g0356500 | - | Detail |
| C2H1g10561 | 1:12,903,821-12,906,003 | + | - | - | - | - | - | Detail |
| C2H1g11897 | 1:13,001,066-13,008,295 | + | C1H1g17978 | CX1g007156 | LOC_Os01g25484 | Os01g0357100 | - | Detail |
| C2H1g07062 | 1:13,008,532-13,009,201 | + | C1H1g12222 | - | LOC_Os01g25500 | Os01g0357200 | - | Detail |
| C2H1g14512 | 1:13,026,899-13,028,339 | - | C1H9g17725 | CX9g058095 | LOC_Os11g30820 | Os11g0504000 | - | Detail |
| C2H1g10094 | 1:13,035,200-13,035,722 | + | C1H1g10812 | CX1g005128 | LOC_Os01g25510 | Os01g0357400 | - | Detail |
| C2H1g25629 | 1:13,036,624-13,037,067 | + | C1H1g18486 | CX1g007156 | LOC_Os01g25484 | Os01g0357500 | - | Detail |
| C2H1g22026 | 1:13,101,097-13,106,067 | + | C1H1g04779 | CX1g000806 | LOC_Os01g25530 | Os01g0357800 | - | Detail |
| C2H1g00631 | 1:13,109,824-13,110,177 | - | C1H1g04222 | CX1g003390 | LOC_Os01g25540 | Os01g0357900 | - | Detail |
| C2H1g06726 | 1:13,115,464-13,115,817 | - | C1H1g19001 | CX1g003390 | LOC_Os01g25560 | Os01g0358100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |