| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g13173 | 2:29,137,135-29,138,778 | - | C2H2g25167 | CX2g019012 | LOC_Os02g51910 | Os02g0755600 | - | Detail |
| C1H2g00252 | 2:29,146,967-29,148,690 | + | C2H2g08519 | CX2g020923 | LOC_Os02g51930 | Os02g0755900 | UGT3, OsUGT3 | Detail |
| C1H2g13826 | 2:29,152,880-29,153,313 | - | C2H2g01748 | - | LOC_Os02g51950 | Os02g0756100 | OsEPFL2 | Detail |
| C1H2g18356 | 2:29,175,431-29,175,916 | + | C2H2g04860 | CX2g023173 | LOC_Os02g52120 | - | - | Detail |
| C1H2g11994 | 2:29,185,231-29,187,982 | + | C2H2g26225 | CX2g020517 | LOC_Os02g52130 | Os02g0757700 | - | Detail |
| C1H2g23218 | 2:29,192,450-29,194,524 | + | C2H2g03437 | CX2g023574 | LOC_Os02g47480 | Os02g0592600 | - | Detail |
| C1H2g00307 | 2:29,199,940-29,203,787 | - | C2H2g01455 | CX2g020566 | LOC_Os02g52140 | Os02g0757900 | - | Detail |
| C1H2g27632 | 2:29,204,004-29,204,932 | + | C2H2g25477 | CX2g023549 | LOC_Os02g52150 | Os02g0758000 | - | Detail |
| C1H2g13642 | 2:29,207,402-29,214,445 | + | C2H2g06385 | CX2g020363 | LOC_Os02g52160 | Os02g0758100 | - | Detail |
| C1H2g04566 | 2:29,223,417-29,226,535 | + | - | CX2g023225 | - | - | - | Detail |
| C1H2g09312 | 2:29,229,008-29,229,813 | - | C2H2g20568 | CX2g018879 | LOC_Os02g52180 | Os02g0758800 | - | Detail |
| C1H2g17070 | 2:29,236,802-29,238,728 | - | C2H2g15822 | CX2g019685 | LOC_Os02g52190 | Os02g0759000 | OsbHLH048 | Detail |
| C1H2g20944 | 2:29,252,549-29,254,213 | + | C2H2g17235 | CX2g023989 | LOC_Os02g52220 | Os02g0759500 | - | Detail |
| C1H2g18903 | 2:29,261,529-29,264,803 | + | C2H2g04549 | CX2g021992 | LOC_Os02g52230 | Os02g0759700 | - | Detail |
| C1H2g07998 | 2:29,275,610-29,277,668 | + | C2H2g25872 | CX2g019154 | LOC_Os02g52260 | Os02g0759900 | - | Detail |
| C1H2g13404 | 2:29,278,490-29,280,295 | - | C2H2g05401 | CX2g024435 | LOC_Os02g52270 | Os02g0760000 | - | Detail |
| C1H2g19953 | 2:29,283,679-29,293,306 | + | C2H2g07649 | CX2g021307 | LOC_Os02g52280 | Os02g0760200 | - | Detail |
| C1H2g28015 | 2:29,293,922-29,296,001 | - | C2H2g26428 | CX2g021362 | LOC_Os02g52290 | Os02g0760300 | OsFKBP12 | Detail |
| C1H2g13116 | 2:29,298,091-29,299,165 | + | C2H2g12246 | CX2g022268 | LOC_Os02g52300 | Os02g0760400 | - | Detail |
| C1H2g15243 | 2:29,300,045-29,301,904 | - | C2H2g13652 | CX2g020044 | LOC_Os02g52314 | Os02g0760500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g19519 | 5:3,806,535-3,807,523 | + | C1H5g05273 | CX5g039762 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| C2H5g08820 | 5:3,810,342-3,811,410 | - | C1H5g26746 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| C2H5g24682 | 5:3,811,471-3,812,055 | - | C1H5g15273 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| C2H5g23593 | 5:3,812,886-3,813,561 | - | C1H5g24081 | CX5g038579 | LOC_Os05g08550 | - | - | Detail |
| C2H5g22086 | 5:3,814,422-3,816,906 | - | C1H5g18416 | CX5g037926 | LOC_Os05g08554 | Os05g0178300 | - | Detail |
| C2H5g19576 | 5:3,818,245-3,821,564 | - | C1H5g28500 | CX5g037936 | LOC_Os05g08560 | Os05g0178400 | - | Detail |
| C2H5g23931 | 5:3,828,656-3,831,151 | - | C1H5g30909 | CX5g039091 | LOC_Os05g08570 | Os05g0178600 | - | Detail |
| C2H5g20930 | 5:3,831,186-3,831,443 | - | C1H5g11220 | CX5g038646 | - | Os05g0178600 | - | Detail |
| C2H5g20358 | 5:3,851,213-3,855,100 | + | C1H5g28275 | CX5g038400 | LOC_Os05g08600 | Os05g0178900 | - | Detail |
| C2H5g18108 | 5:3,857,538-3,861,896 | + | C1H5g03795 | CX5g039771 | LOC_Os05g08610 | Os05g0179000 | - | Detail |
| C2H5g28488 | 5:3,873,219-3,873,671 | + | C1H5g15516 | - | LOC_Os08g23900 | - | - | Detail |
| C2H5g17102 | 5:3,895,817-3,897,238 | - | C1H5g19959 | CX5g037983 | LOC_Os05g08640 | Os05g0179300 | - | Detail |
| C2H5g23753 | 5:3,923,426-3,926,532 | + | C1H5g21520 | CX5g039721 | LOC_Os05g08730 | Os05g0179800 | - | Detail |
| C2H5g25802 | 5:3,966,183-3,969,681 | - | C1H5g27830 | CX5g038350 | LOC_Os05g08790 | Os05g0180400 | - | Detail |
| C2H5g06685 | 5:3,970,612-3,973,529 | - | C1H5g02747 | CX5g037875 | LOC_Os05g08800 | Os05g0180500 | - | Detail |
| C2H5g05984 | 5:3,988,380-3,998,378 | - | C1H5g20076 | CX5g036876 | LOC_Os05g08810 | Os05g0180600 | - | Detail |
| C2H5g03050 | 5:3,999,805-4,000,905 | + | C1H5g03323 | CX5g037205 | LOC_Os05g08820 | Os05g0180700 | - | Detail |
| C2H5g11956 | 5:4,009,266-4,015,221 | + | C1H5g21276 | CX5g037851 | LOC_Os05g08840 | Os05g0181000 | - | Detail |
| C2H5g06572 | 5:4,019,186-4,020,189 | - | C1H5g29149 | CX5g037202 | LOC_Os05g08854 | Os05g0181250 | - | Detail |
| C2H5g00592 | 5:4,027,481-4,027,732 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |