| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g29538 | 2:28,623,770-28,627,762 | - | C2H2g01303 | CX2g024594 | LOC_Os02g51060 | Os02g0744600 | OsCSLA6 | Detail |
| C1H2g23191 | 2:28,629,885-28,634,838 | - | C2H2g07487 | CX2g022323 | LOC_Os02g51070 | Os02g0744700 | OsSSII-2 | Detail |
| C1H2g05032 | 2:28,642,060-28,644,192 | + | C2H2g08168 | CX2g022360 | LOC_Os02g51080 | Os02g0744900 | LYL1, OsChl P, OsGGRI, OsGGR1 | Detail |
| C1H2g28990 | 2:28,649,362-28,652,256 | - | C2H2g17927 | CX2g022714 | LOC_Os02g51100 | Os02g0745000 | - | Detail |
| C1H2g29361 | 2:28,659,961-28,660,685 | + | C2H2g17969 | CX2g021804 | LOC_Os02g51110 | Os02g0745100 | LSI1, lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1 | Detail |
| C1H2g08078 | 2:28,661,942-28,663,062 | + | C2H2g17969 | CX2g021804 | LOC_Os02g51110 | Os02g0745100 | LSI1, lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1 | Detail |
| C1H2g10044 | 2:28,670,777-28,676,613 | - | C2H2g17512 | - | - | - | - | Detail |
| C1H2g22873 | 2:28,674,191-28,676,356 | + | C2H2g06955 | CX2g024809 | LOC_Os02g42970 | Os02g0745300 | - | Detail |
| C1H2g26267 | 2:28,680,083-28,682,042 | + | C2H2g19332 | CX2g024083 | LOC_Os02g51130 | Os02g0745400 | - | Detail |
| C1H2g29615 | 2:28,683,459-28,689,906 | + | C2H2g06018 | CX2g019686 | LOC_Os02g51140 | Os02g0745600 | OsNRP3 | Detail |
| C1H2g00830 | 2:28,690,893-28,693,076 | + | C2H2g18017 | CX2g024841 | LOC_Os02g51150 | Os02g0745700 | - | Detail |
| C1H2g30172 | 2:28,694,047-28,698,417 | + | C2H2g26607 | CX2g020073 | LOC_Os02g51160 | Os02g0745800 | - | Detail |
| C1H2g23262 | 2:28,701,317-28,704,403 | - | C2H2g23677 | CX2g022616 | LOC_Os02g51180 | Os02g0746000 | CUL3A, OsCUL3a | Detail |
| C1H2g29916 | 2:28,742,847-28,744,056 | - | - | - | LOC_Os02g58180 | - | - | Detail |
| C1H2g09862 | 2:28,762,511-28,764,482 | + | C2H2g20238 | CX2g024649 | LOC_Os02g51290 | Os02g0747500 | - | Detail |
| C1H2g31845 | 2:28,765,176-28,769,388 | - | C2H2g08371 | CX2g020731 | LOC_Os02g51300 | Os02g0747600 | - | Detail |
| C1H2g24533 | 2:28,776,335-28,776,828 | - | C2H2g00887 | CX2g020483 | LOC_Os02g51320 | Os02g0747900 | ILI5, OsBUL1, PGL2 | Detail |
| C1H2g27272 | 2:28,786,325-28,791,753 | - | C2H2g18570 | CX2g019270 | LOC_Os02g51330 | Os02g0748100 | - | Detail |
| C1H2g12274 | 2:28,796,040-28,798,803 | - | C2H2g16535 | CX2g021584 | LOC_Os02g51350 | Os02g0748300 | - | Detail |
| C1H2g22698 | 2:28,818,304-28,829,292 | + | C2H2g14137 | CX2g024543 | LOC_Os02g51400 | Os02g0749150 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g29186 | 1:29,875,647-29,879,858 | - | C1H1g11361 | CX1g003912 | LOC_Os01g58100 | Os01g0793300 | - | Detail |
| C2H1g23821 | 1:29,883,184-29,888,201 | - | C1H1g17382 | CX1g006007 | LOC_Os01g58114 | Os01g0793500 | - | Detail |
| C2H1g21142 | 1:29,889,354-29,890,036 | - | C1H1g09815 | CX1g006007 | LOC_Os01g58114 | Os01g0793600 | - | Detail |
| C2H1g27559 | 1:29,910,905-29,915,746 | - | C1H6g08663 | - | - | - | - | Detail |
| C2H1g16569 | 1:29,921,819-29,924,435 | + | C1H1g08455 | CX1g000505 | LOC_Os01g58194 | Os01g0794400 | - | Detail |
| C2H1g26817 | 1:29,925,181-29,928,699 | - | C1H1g01720 | CX1g006106 | LOC_Os01g58220 | Os01g0794500 | - | Detail |
| C2H1g13385 | 1:29,929,785-29,933,192 | + | C1H1g02942 | CX1g000031 | LOC_Os01g58240 | Os01g0794800 | - | Detail |
| C2H1g08724 | 1:29,930,451-29,934,489 | - | - | - | - | - | - | Detail |
| C2H1g21351 | 1:29,934,658-29,935,125 | - | C1H1g25833 | - | - | - | - | Detail |
| C2H1g29117 | 1:29,938,020-29,942,253 | + | C1H1g25653 | CX1g000031 | LOC_Os01g58240 | Os01g0795000 | RSP1 | Detail |
| C2H1g27055 | 1:29,946,525-29,948,643 | + | C1H1g21214 | CX1g000031 | LOC_Os01g58270 | Os01g0795100 | - | Detail |
| C2H1g01179 | 1:29,952,810-29,954,607 | + | C1H1g21214 | - | LOC_Os01g58270 | Os01g0795100 | - | Detail |
| C2H1g17970 | 1:29,956,283-29,959,634 | + | C1H1g23689 | CX1g000031 | LOC_Os01g58280 | Os01g0795200 | - | Detail |
| C2H1g21575 | 1:29,963,039-29,967,611 | + | C1H1g13842 | CX1g000031 | LOC_Os01g58290 | Os01g0795400 | Hwi2 | Detail |
| C2H1g04222 | 1:29,968,866-29,969,117 | + | C1H1g19856 | - | LOC_Os01g58310 | Os01g0795600 | - | Detail |
| C2H1g14294 | 1:29,970,346-29,970,564 | + | C1H1g00284 | - | LOC_Os01g58340 | Os01g0795900 | - | Detail |
| C2H1g23146 | 1:29,992,195-29,994,729 | + | C1H1g15205 | CX1g003893 | LOC_Os01g58380 | Os01g0796400 | - | Detail |
| C2H1g07599 | 1:29,995,201-29,997,294 | - | C1H1g14537 | CX1g005123 | LOC_Os01g58390 | Os01g0796500 | - | Detail |
| C2H1g05560 | 1:30,001,312-30,006,259 | - | C1H1g28486 | CX1g003555 | LOC_Os01g58400 | Os01g0796700 | - | Detail |
| C2H1g00808 | 1:30,008,941-30,009,555 | - | C1H1g15191 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |