| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g05277 | 2:28,040,330-28,040,981 | - | C2H2g23239 | CX2g024096 | LOC_Os02g50050 | Os02g0733400 | - | Detail |
| C1H2g25545 | 2:28,048,837-28,051,565 | + | C2H2g29637 | CX2g024530 | LOC_Os02g50100 | Os02g0733800 | - | Detail |
| C1H2g09486 | 2:28,070,190-28,070,921 | + | C2H2g14181 | CX2g019678 | LOC_Os02g50130 | Os02g0734300 | - | Detail |
| C1H2g30933 | 2:28,083,037-28,084,380 | + | C2H2g24179 | - | LOC_Os02g50140 | Os02g0734400 | - | Detail |
| C1H2g20322 | 2:28,087,820-28,090,232 | + | C2H2g24179 | - | LOC_Os02g50150 | Os02g0734500 | - | Detail |
| C1H2g10371 | 2:28,092,270-28,092,723 | + | C2H2g06034 | - | LOC_Os02g50174 | Os02g0734600 | - | Detail |
| C1H2g11288 | 2:28,099,975-28,101,615 | + | C2H2g03591 | - | LOC_Os02g50174 | Os02g0734600 | - | Detail |
| C1H2g02030 | 2:28,109,639-28,111,451 | + | C2H2g24372 | CX2g022067 | LOC_Os02g50220 | Os02g0735100 | - | Detail |
| C1H2g29553 | 2:28,115,033-28,118,669 | + | C2H2g15743 | CX2g022006 | LOC_Os02g50230 | Os02g0735100 | - | Detail |
| C1H2g01228 | 2:28,120,600-28,124,341 | - | C2H2g04098 | CX2g020555 | LOC_Os02g50240 | Os02g0735200 | - | Detail |
| C1H2g20929 | 2:28,144,028-28,147,137 | + | C2H2g09760 | CX2g023940 | - | - | - | Detail |
| C1H2g08659 | 2:28,148,927-28,149,775 | + | C2H2g19052 | CX2g024168 | LOC_Os02g50250 | - | - | Detail |
| C1H2g07791 | 2:28,151,395-28,154,493 | + | C2H2g13627 | CX2g019816 | LOC_Os02g50270 | Os02g0735700 | - | Detail |
| C1H2g05849 | 2:28,155,201-28,157,132 | + | C2H2g15470 | CX2g019477 | LOC_Os02g50280 | Os02g0735800 | - | Detail |
| C1H2g22855 | 2:28,158,483-28,160,545 | - | C2H2g10624 | CX2g023040 | LOC_Os02g50290 | Os02g0735900 | - | Detail |
| C1H2g03349 | 2:28,172,410-28,177,664 | + | C2H2g27320 | CX2g019949 | LOC_Os02g50320 | Os02g0736100 | - | Detail |
| C1H2g05522 | 2:28,180,363-28,188,329 | + | C2H2g10188 | CX2g021853 | LOC_Os02g50330 | Os02g0736200 | RDR1, OsRDR1 | Detail |
| C1H2g23012 | 2:28,188,562-28,195,251 | - | C2H2g27537 | CX2g019081 | LOC_Os02g50340 | Os02g0736300 | - | Detail |
| C1H2g06623 | 2:28,196,665-28,200,464 | - | C2H2g19993 | CX2g021694 | LOC_Os02g50350 | Os02g0736400 | OsDHODH1 | Detail |
| C1H2g07187 | 2:28,201,644-28,207,557 | - | C2H2g07436 | CX2g020413 | LOC_Os02g50360 | Os02g0736500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g29368 | 4:30,507,658-30,513,591 | + | C1H4g17177 | CX4g034793 | LOC_Os04g59320 | Os04g0689400 | - | Detail |
| C2H4g10646 | 4:30,514,406-30,515,925 | + | C1H4g15962 | CX4g031663 | LOC_Os04g59330 | Os04g0689500 | - | Detail |
| C2H4g21499 | 4:30,520,045-30,521,017 | + | C1H4g05384 | CX4g036307 | LOC_Os04g59340 | Os04g0689700 | - | Detail |
| C2H4g01472 | 4:30,523,602-30,524,699 | + | C1H4g05536 | CX4g034950 | LOC_Os04g59360 | Os04g0689800 | - | Detail |
| C2H4g12610 | 4:30,526,563-30,530,889 | + | C1H4g14916 | CX4g032101 | LOC_Os04g59360 | Os04g0689800 | - | Detail |
| C2H4g18186 | 4:30,541,288-30,542,675 | + | C1H4g15741 | CX4g031741 | LOC_Os04g59370 | Os04g0689900 | - | Detail |
| C2H4g13638 | 4:30,551,643-30,554,062 | + | C1H4g21540 | CX4g034943 | LOC_Os04g59380 | Os04g0690100 | - | Detail |
| C2H4g23794 | 4:30,561,339-30,567,049 | + | C1H4g10285 | CX4g032712 | LOC_Os04g59394 | Os04g0690300 | - | Detail |
| C2H4g10236 | 4:30,568,757-30,572,207 | + | C1H4g14673 | CX4g035891 | LOC_Os04g59400 | Os04g0690400 | - | Detail |
| C2H4g10344 | 4:30,578,674-30,579,488 | + | C1H4g07117 | CX4g034143 | LOC_Os04g59420 | Os04g0690500 | - | Detail |
| C2H4g01830 | 4:30,580,591-30,584,096 | - | C1H4g16012 | CX4g032346 | LOC_Os04g59430 | Os04g0690600 | - | Detail |
| C2H4g21324 | 4:30,589,590-30,590,357 | + | - | - | LOC_Os04g59440 | Os04g0690800 | PSBS2, PsbS, OsPsbS2, PSII-S | Detail |
| C2H4g11677 | 4:30,594,897-30,596,851 | + | C1H4g05861 | CX4g034110 | LOC_Os04g59450 | Os04g0691100 | SAPK5, OsSAPK5 | Detail |
| C2H4g24101 | 4:30,597,364-30,606,211 | - | C1H4g07779 | CX4g036214 | LOC_Os04g59460 | Os04g0691200 | - | Detail |
| C2H4g14210 | 4:30,611,359-30,612,219 | - | C1H4g13585 | CX4g036345 | LOC_Os04g59470 | Os04g0691300 | - | Detail |
| C2H4g07706 | 4:30,613,775-30,616,115 | + | C1H4g12409 | CX4g035525 | LOC_Os04g59480 | Os04g0691400 | - | Detail |
| C2H4g03071 | 4:30,621,244-30,633,385 | + | C1H4g07625 | CX4g032924 | LOC_Os04g59494 | Os04g0691500 | - | Detail |
| C2H4g15610 | 4:30,633,797-30,634,228 | + | C1H4g01268 | - | - | Os04g0691600 | - | Detail |
| C2H4g09678 | 4:30,636,339-30,645,952 | - | C1H4g29823 | CX4g035435 | LOC_Os04g59510 | Os04g0691700 | - | Detail |
| C2H4g25533 | 4:30,645,582-30,645,842 | + | C1H4g24974 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |