| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g24734 | 2:27,612,549-27,617,206 | - | C2H2g15860 | CX2g024558 | LOC_Os02g49150 | Os02g0723300 | - | Detail |
| C1H2g24233 | 2:27,622,626-27,622,877 | + | C2H2g04081 | CX2g024533 | LOC_Os02g49160 | Os02g0723400 | - | Detail |
| C1H2g18213 | 2:27,623,315-27,623,663 | + | C2H2g20481 | CX2g024766 | LOC_Os02g49160 | Os02g0817600 | - | Detail |
| C1H2g16175 | 2:27,625,251-27,629,422 | - | C2H2g22851 | CX2g020430 | LOC_Os02g49180 | Os02g0723600 | - | Detail |
| C1H2g00870 | 2:27,629,824-27,632,226 | + | C2H2g17164 | CX2g020353 | LOC_Os02g49190 | Os02g0723700 | - | Detail |
| C1H2g20021 | 2:27,648,325-27,653,115 | + | C2H2g00357 | CX2g023328 | LOC_Os02g49230 | Os02g0724000 | DTH2, OsCCT08, OsBBX7, OsN | Detail |
| C1H2g09863 | 2:27,657,352-27,661,479 | + | C2H2g14057 | CX2g021258 | LOC_Os02g49260 | Os02g0724500 | - | Detail |
| C1H2g24655 | 2:27,662,296-27,667,448 | + | C2H2g00624 | CX2g020735 | LOC_Os02g49270 | Os02g0724600 | - | Detail |
| C1H2g20212 | 2:27,676,999-27,680,392 | + | C2H2g05357 | CX2g024361 | LOC_Os02g49310 | Os02g0725000 | OsAGC6 | Detail |
| C1H2g12743 | 2:27,682,032-27,685,766 | - | C2H2g11959 | CX2g021752 | LOC_Os02g49320 | Os02g0725100 | - | Detail |
| C1H2g25813 | 2:27,686,562-27,690,996 | + | C2H2g08115 | CX2g019231 | LOC_Os02g49326 | Os02g0725200 | - | Detail |
| C1H2g14119 | 2:27,691,109-27,694,572 | + | C2H2g27630 | CX2g023038 | LOC_Os02g49332 | Os02g0725300 | - | Detail |
| C1H2g16618 | 2:27,698,025-27,698,755 | - | C2H2g22284 | CX2g023830 | LOC_Os02g49350 | Os02g0725500 | - | Detail |
| C1H2g28453 | 2:27,699,390-27,701,648 | + | C2H2g23242 | CX2g023625 | LOC_Os02g49360 | Os02g0725600 | - | Detail |
| C1H2g10199 | 2:27,708,874-27,709,416 | - | C2H2g29177 | CX2g023592 | LOC_Os02g49410 | Os02g0725900 | HAP3K, OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41 | Detail |
| C1H2g22692 | 2:27,723,541-27,724,322 | + | - | - | - | - | - | Detail |
| C1H2g05214 | 2:27,736,753-27,740,170 | + | C2H2g05677 | CX2g019656 | LOC_Os02g49450 | Os02g0726400 | - | Detail |
| C1H2g12431 | 2:27,744,500-27,748,577 | + | C2H2g30015 | CX2g023556 | LOC_Os02g49460 | Os02g0726500 | - | Detail |
| C1H2g21836 | 2:27,752,289-27,753,196 | - | C2H2g09813 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| C1H2g06100 | 2:27,753,386-27,757,067 | - | C2H2g09813 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17746 | 3:5,298,248-5,304,864 | + | C1H3g17331 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C2H3g08543 | 3:5,305,257-5,310,545 | + | C1H3g12951 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C2H3g18859 | 3:5,311,539-5,315,043 | + | C1H3g14932 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C2H3g25555 | 3:5,315,485-5,320,858 | - | C1H3g10644 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C2H3g22606 | 3:5,325,484-5,328,881 | - | C1H3g04750 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C2H3g22039 | 3:5,331,057-5,334,978 | + | C1H3g15538 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C2H3g03744 | 3:5,337,484-5,342,418 | - | C1H3g09681 | - | - | - | - | Detail |
| C2H3g29664 | 3:5,344,016-5,347,863 | - | C1H3g00304 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C2H3g24849 | 3:5,374,993-5,381,339 | + | C1H3g11825 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C2H3g11270 | 3:5,386,951-5,389,327 | - | C1H3g00757 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g18287 | 3:5,395,313-5,395,507 | - | C1H3g04456 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g25916 | 3:5,416,591-5,421,828 | + | C1H3g30377 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C2H3g12512 | 3:5,422,610-5,426,000 | + | C1H3g02997 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C2H3g19342 | 3:5,426,491-5,428,521 | - | C1H3g12813 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C2H3g13701 | 3:5,436,359-5,437,252 | - | C1H3g00186 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C2H3g30038 | 3:5,450,317-5,452,147 | + | C1H3g15045 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C2H3g29170 | 3:5,452,840-5,453,269 | + | - | - | - | - | - | Detail |
| C2H3g05049 | 3:5,453,922-5,455,100 | - | C1H3g15740 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C2H3g19799 | 3:5,456,253-5,457,305 | - | C1H3g17461 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C2H3g02073 | 3:5,459,766-5,463,790 | + | C1H3g21782 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |