| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04067 | 2:27,253,171-27,253,504 | - | C2H2g29012 | - | - | Os02g0715250 | - | Detail |
| C1H2g08660 | 2:27,253,991-27,254,281 | - | - | - | - | - | - | Detail |
| C1H2g16891 | 2:27,292,691-27,293,857 | - | C2H2g10463 | CX2g023440 | LOC_Os02g48560 | Os02g0716500 | - | Detail |
| C1H2g01901 | 2:27,303,466-27,308,305 | - | C2H2g21774 | CX2g020074 | LOC_Os02g48570 | Os02g0716800 | - | Detail |
| C1H2g08993 | 2:27,312,477-27,314,508 | + | C2H2g14528 | CX2g019155 | LOC_Os02g48590 | Os02g0717100 | - | Detail |
| C1H2g09406 | 2:27,322,312-27,322,726 | + | C2H2g18913 | CX2g023240 | LOC_Os02g48610 | Os02g0717300 | - | Detail |
| C1H2g19653 | 2:27,326,765-27,338,465 | - | C2H2g28722 | CX2g019132 | LOC_Os02g48620 | Os02g0717400 | - | Detail |
| C1H2g29287 | 2:27,345,603-27,348,179 | + | C2H2g29775 | CX2g024079 | LOC_Os02g48630 | Os02g0717500 | - | Detail |
| C1H2g12467 | 2:27,348,348-27,352,014 | - | C2H2g23859 | CX2g021186 | LOC_Os02g48640 | Os02g0717600 | - | Detail |
| C1H2g15048 | 2:27,357,842-27,359,307 | - | C2H2g12036 | CX2g021971 | LOC_Os02g48660 | - | - | Detail |
| C1H2g27254 | 2:27,362,701-27,363,306 | + | C2H2g28577 | CX2g024923 | LOC_Os02g48680 | Os02g0718000 | - | Detail |
| C1H2g08324 | 2:27,380,011-27,381,503 | - | - | CX2g020343 | - | - | - | Detail |
| C1H2g04979 | 2:27,390,159-27,397,523 | + | C2H7g12708 | CX2g020470 | - | - | - | Detail |
| C1H2g27172 | 2:27,403,218-27,403,573 | - | C2H2g17849 | CX2g022662 | LOC_Os02g48830 | Os02g0720200 | - | Detail |
| C1H2g26643 | 2:27,413,215-27,413,701 | + | C2H2g24080 | CX2g020985 | LOC_Os02g42870 | Os02g0641900 | OsMYB38 | Detail |
| C1H2g29414 | 2:27,418,955-27,422,380 | + | C2H2g02359 | CX2g024042 | LOC_Os02g48720 | Os02g0718900 | - | Detail |
| C1H2g26150 | 2:27,426,488-27,428,998 | + | C2H2g20525 | CX2g021808 | LOC_Os02g48730 | Os02g0719000 | - | Detail |
| C1H2g28212 | 2:27,432,505-27,437,280 | + | C2H2g12096 | CX2g021733 | LOC_Os02g48740 | Os02g0719100 | - | Detail |
| C1H2g06293 | 2:27,453,050-27,454,936 | + | C2H2g00700 | CX2g022686 | LOC_Os02g48770 | Os02g0719600 | - | Detail |
| C1H2g12998 | 2:27,461,721-27,469,872 | + | C2H2g24831 | CX2g022881 | LOC_Os02g48790 | Os02g0719800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02060 | 3:485,335-491,499 | - | C1H3g02926 | CX3g026446 | LOC_Os03g02030 | Os03g0111100 | - | Detail |
| C2H3g10416 | 3:492,780-495,271 | - | C1H3g26294 | CX3g031029 | LOC_Os03g02040 | Os03g0111200 | - | Detail |
| C2H3g28715 | 3:498,296-498,589 | - | C1H3g15608 | CX3g030230 | LOC_Os03g02050 | Os03g0111300 | - | Detail |
| C2H3g08607 | 3:504,319-505,372 | - | C1H3g30842 | CX3g026627 | LOC_Os03g02070 | Os03g0111400 | - | Detail |
| C2H3g00134 | 3:508,909-517,722 | + | C1H3g29372 | CX3g029050 | LOC_Os03g02100 | Os03g0694900 | - | Detail |
| C2H3g12317 | 3:518,627-525,581 | + | C1H3g12244 | CX3g028048 | LOC_Os03g02110 | Os03g0111800 | - | Detail |
| C2H3g29148 | 3:528,162-538,899 | + | C1H3g07282 | CX3g026996 | LOC_Os03g02150 | Os03g0112101 | - | Detail |
| C2H3g00838 | 3:541,524-550,028 | + | C1H3g30522 | CX3g029929 | LOC_Os03g02160 | Os03g0112700 | EHD4, OsC3H20, C3H20, Ehd4 | Detail |
| C2H3g27881 | 3:550,776-555,023 | - | C1H3g07238 | CX3g030050 | LOC_Os03g02170 | Os03g0112800 | STS1 | Detail |
| C2H3g26177 | 3:555,421-557,266 | - | C1H3g09620 | CX3g030634 | LOC_Os03g02180 | Os03g0112900 | OsF5HL2 | Detail |
| C2H3g13014 | 3:562,004-563,679 | - | C1H3g14295 | CX3g025559 | LOC_Os03g02190 | Os03g0113000 | - | Detail |
| C2H3g22975 | 3:566,114-569,005 | + | C1H3g06676 | CX3g028290 | LOC_Os03g02200 | Os03g0113100 | - | Detail |
| C2H3g07317 | 3:570,078-572,543 | + | C1H3g29988 | CX3g026697 | LOC_Os03g02210 | Os03g0113200 | - | Detail |
| C2H3g26703 | 3:581,466-585,763 | - | C1H3g08654 | CX3g028541 | LOC_Os03g02240 | - | - | Detail |
| C2H3g21122 | 3:596,680-601,118 | - | C1H3g00977 | CX3g027292 | LOC_Os03g02260 | Os03g0113700 | - | Detail |
| C2H3g16661 | 3:601,432-606,865 | + | C1H3g24927 | CX3g030810 | LOC_Os03g02270 | Os03g0113800 | - | Detail |
| C2H3g07262 | 3:612,061-612,657 | + | C1H3g15339 | CX3g028218 | LOC_Os03g02280 | Os03g0113900 | OsS40-4 | Detail |
| C2H3g09613 | 3:616,392-622,786 | + | C1H3g18554 | CX3g027517 | LOC_Os03g02290 | Os03g0114000 | - | Detail |
| C2H3g23619 | 3:623,865-624,590 | + | C1H3g18461 | CX3g025737 | LOC_Os03g02300 | Os03g0114100 | - | Detail |
| C2H3g25616 | 3:625,873-627,438 | - | C1H3g30974 | CX3g030259 | LOC_Os03g02310 | Os03g0114200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |