| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g05854 | 2:24,113,140-24,117,694 | - | C2H2g09002 | CX2g023178 | LOC_Os02g43010 | Os02g0644000 | OsVPE3, REP-2 | Detail |
| C1H2g12524 | 2:24,118,233-24,122,633 | + | C2H2g00079 | CX2g022755 | LOC_Os02g43020 | Os02g0644100 | - | Detail |
| C1H2g05443 | 2:24,131,693-24,135,108 | - | C2H2g15622 | CX2g021698 | LOC_Os02g43040 | Os02g0644500 | OsATG13a | Detail |
| C1H2g08836 | 2:24,140,556-24,141,254 | - | C2H2g02399 | CX2g021900 | LOC_Os02g43120 | Os02g0645000 | - | Detail |
| C1H2g01413 | 2:24,145,393-24,151,404 | - | C2H2g04299 | CX2g023325 | LOC_Os02g43050 | Os02g0644400 | - | Detail |
| C1H2g28893 | 2:24,171,407-24,172,099 | - | C2H2g07056 | CX2g023648 | LOC_Os02g43120 | Os02g0645000 | - | Detail |
| C1H2g14943 | 2:24,174,378-24,180,595 | - | C2H2g08300 | CX2g019755 | LOC_Os02g43130 | Os02g0645100 | - | Detail |
| C1H2g17222 | 2:24,195,210-24,196,754 | + | C2H2g12947 | CX2g024545 | LOC_Os02g43150 | Os02g0645600 | - | Detail |
| C1H2g19085 | 2:24,230,972-24,232,280 | + | C2H2g19622 | CX2g024814 | LOC_Os02g43170 | Os02g0646200 | - | Detail |
| C1H2g22786 | 2:24,234,363-24,237,015 | + | C2H2g11300 | CX2g024271 | LOC_Os02g43180 | Os02g0646400 | - | Detail |
| C1H2g07582 | 2:24,238,018-24,244,395 | - | C2H2g09061 | CX2g020293 | LOC_Os02g43194 | Os02g0646500 | - | Detail |
| C1H2g05654 | 2:24,264,441-24,269,829 | + | C2H2g12985 | CX2g024426 | LOC_Os02g43280 | Os02g0647900 | - | Detail |
| C1H2g13691 | 2:24,274,583-24,275,783 | - | C2H2g29445 | CX2g021973 | LOC_Os02g43290 | Os02g0648100 | - | Detail |
| C1H2g15207 | 2:24,281,913-24,285,136 | - | C2H2g03827 | CX2g020713 | LOC_Os02g43300 | Os02g0648300 | - | Detail |
| C1H2g10382 | 2:24,285,889-24,286,299 | - | C2H2g03827 | CX2g020713 | LOC_Os02g43300 | Os02g0104500 | - | Detail |
| C1H2g25916 | 2:24,322,971-24,323,840 | + | C2H2g11895 | CX2g019169 | LOC_Os02g43330 | Os02g0649300 | HOX24, Oshox24, OsHox24, OsSLI1 | Detail |
| C1H2g29202 | 2:24,328,411-24,332,712 | - | C2H2g11536 | CX2g021953 | LOC_Os02g43340 | Os02g0649400 | - | Detail |
| C1H2g22654 | 2:24,337,420-24,343,643 | + | C2H2g04607 | CX2g021451 | LOC_Os02g43350 | Os02g0649700 | - | Detail |
| C1H2g29127 | 2:24,344,406-24,345,088 | - | C2H2g04813 | CX2g024526 | LOC_Os02g43360 | Os02g0649800 | - | Detail |
| C1H2g17207 | 2:24,350,005-24,354,750 | - | C2H2g23002 | CX2g022915 | LOC_Os02g43370 | Os02g0649900 | YSL2, OsYSL2, Os-YSL2, OsYs6 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g03508 | 5:7,583,049-7,583,942 | - | C1H5g21179 | CX5g038349 | LOC_Os05g15770 | Os05g0247100 | DIP3, XIP, OsHI-XIP | Detail |
| C2H5g09723 | 5:7,630,074-7,639,532 | - | C1H5g04227 | CX5g040966 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| C2H5g16380 | 5:7,655,551-7,657,410 | - | C1H5g29560 | CX5g038055 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| C2H5g23841 | 5:7,670,803-7,671,060 | - | C1H5g10784 | CX5g038858 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| C2H5g02175 | 5:7,695,276-7,697,536 | - | C1H5g29560 | CX5g039101 | LOC_Os05g16100 | Os05g0249800 | - | Detail |
| C2H5g15350 | 5:7,707,412-7,710,911 | - | C1H5g23916 | CX5g039101 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| C2H5g06835 | 5:7,715,435-7,719,297 | - | C1H5g17383 | CX5g039101 | LOC_Os05g16240 | Os05g0250200 | - | Detail |
| C2H5g11862 | 5:7,723,279-7,726,185 | - | C1H5g19855 | CX5g041055 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g27100 | 5:7,736,709-7,737,431 | - | - | - | - | - | - | Detail |
| C2H5g08541 | 5:7,756,996-7,758,426 | - | - | CX5g041082 | - | - | - | Detail |
| C2H5g10190 | 5:7,761,947-7,765,438 | - | C1H5g18798 | CX5g038245 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g00039 | 5:7,788,239-7,791,656 | - | C1H5g13669 | - | - | - | - | Detail |
| C2H5g10863 | 5:7,791,689-7,792,726 | - | C1H5g13669 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C2H5g12394 | 5:7,796,358-7,797,614 | - | C1H5g11478 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C2H5g03213 | 5:7,799,407-7,803,760 | + | C1H5g13415 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C2H5g18069 | 5:7,804,814-7,808,658 | + | C1H5g25482 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C2H5g11253 | 5:7,812,460-7,816,343 | + | C1H5g22880 | CX5g037603 | - | - | - | Detail |
| C2H5g17103 | 5:7,813,545-7,819,371 | - | C1H5g03577 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C2H5g24772 | 5:7,822,367-7,827,353 | - | C1H5g13508 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C2H5g01822 | 5:7,838,754-7,840,413 | - | C1H5g26814 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |