| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g05908 | 2:23,776,756-23,779,551 | - | C2H2g23612 | CX2g020718 | LOC_Os02g42406 | Os02g0636300 | - | Detail |
| C1H2g22031 | 2:23,780,756-23,783,137 | - | C2H2g00476 | CX2g020431 | LOC_Os02g42412 | Os02g0636400 | - | Detail |
| C1H2g23578 | 2:23,790,092-23,791,012 | - | C2H2g02708 | CX2g020765 | LOC_Os02g42430 | Os02g0636600 | - | Detail |
| C1H2g27721 | 2:23,794,764-23,795,659 | - | C2H2g02768 | CX2g021056 | LOC_Os02g42440 | Os02g0636700 | - | Detail |
| C1H2g29685 | 2:23,824,107-23,832,770 | - | C2H2g00017 | CX2g024584 | LOC_Os02g42520 | Os02g0637700 | - | Detail |
| C1H2g26947 | 2:23,834,755-23,836,844 | + | C2H2g15791 | CX2g019457 | LOC_Os02g42540 | Os02g0637900 | - | Detail |
| C1H2g12864 | 2:23,837,577-23,839,913 | - | C2H2g08073 | CX2g024820 | LOC_Os02g42550 | Os02g0638000 | - | Detail |
| C1H2g12085 | 2:23,841,051-23,842,975 | - | C2H2g00762 | CX2g018862 | LOC_Os02g42560 | Os02g0638200 | - | Detail |
| C1H2g17781 | 2:23,849,851-23,855,192 | - | C2H2g24542 | CX2g019050 | LOC_Os02g42580 | Os02g0638400 | - | Detail |
| C1H2g19771 | 2:23,873,389-23,879,210 | + | C2H2g04927 | CX2g019677 | LOC_Os02g42590 | Os02g0638900 | - | Detail |
| C1H2g26703 | 2:23,880,586-23,890,294 | + | C2H2g27769 | CX2g024937 | LOC_Os02g42600 | Os02g0639000 | LMS, OsLMS | Detail |
| C1H2g01974 | 2:23,893,398-23,895,151 | - | C2H2g18798 | CX2g019865 | LOC_Os02g42620 | Os02g0639100 | - | Detail |
| C1H2g26991 | 2:23,898,655-23,901,148 | - | C2H2g17321 | - | LOC_Os02g42630 | - | - | Detail |
| C1H2g07975 | 2:23,900,813-23,902,176 | + | C2H2g11135 | CX2g019025 | LOC_Os02g42640 | Os02g0639300 | - | Detail |
| C1H2g15307 | 2:23,906,700-23,911,638 | + | C2H2g26400 | CX2g019737 | LOC_Os02g42650 | Os02g0639500 | - | Detail |
| C1H2g14687 | 2:23,912,798-23,916,777 | + | C2H2g16165 | CX2g019078 | LOC_Os02g42660 | Os02g0639600 | - | Detail |
| C1H2g26842 | 2:23,917,464-23,923,965 | + | C2H2g20759 | CX2g020081 | LOC_Os02g42670 | Os02g0639700 | - | Detail |
| C1H2g09035 | 2:23,924,215-23,929,167 | - | C2H2g06781 | CX2g023555 | LOC_Os02g42690 | Os02g0516600 | - | Detail |
| C1H2g13831 | 2:23,932,032-23,936,015 | - | C2H2g16613 | CX2g023257 | LOC_Os02g42700 | Os02g0639900 | - | Detail |
| C1H2g09140 | 2:23,936,639-23,939,268 | + | C2H2g01033 | CX2g024511 | LOC_Os02g42710 | Os02g0640000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09365 | 3:14,022,692-14,029,760 | - | C1H3g05327 | CX3g027782 | LOC_Os03g27510 | Os03g0393700 | - | Detail |
| C2H3g30087 | 3:14,032,064-14,034,436 | - | C1H3g01352 | CX3g026293 | LOC_Os03g32580 | Os03g0211900 | - | Detail |
| C2H3g11623 | 3:14,034,559-14,035,580 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g10908 | 3:14,044,828-14,047,298 | - | C1H3g19955 | CX3g027788 | LOC_Os03g32580 | Os03g0145102 | - | Detail |
| C2H3g03280 | 3:14,048,897-14,050,147 | + | - | - | - | - | - | Detail |
| C2H3g07142 | 3:14,050,595-14,051,936 | + | - | - | - | - | - | Detail |
| C2H3g17405 | 3:14,057,376-14,058,446 | - | - | - | - | - | - | Detail |
| C2H3g04527 | 3:14,069,232-14,069,991 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g28189 | 3:14,070,010-14,070,943 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g21452 | 3:14,083,851-14,085,452 | - | C1H3g17401 | CX3g029574 | - | Os03g0184000 | OsPDS | Detail |
| C2H3g10220 | 3:14,094,321-14,100,635 | - | C1H3g27278 | CX3g031229 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g08253 | 3:14,104,054-14,104,308 | - | - | - | - | - | - | Detail |
| C2H3g06277 | 3:14,167,794-14,171,626 | - | C1H3g13238 | CX3g029516 | LOC_Os03g32580 | Os03g0773700 | - | Detail |
| C2H3g13071 | 3:14,219,645-14,219,983 | - | - | - | LOC_Os02g28210 | - | - | Detail |
| C2H3g00521 | 3:14,231,740-14,241,021 | - | C1H3g28596 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C2H3g03469 | 3:14,295,554-14,300,370 | - | C1H3g26998 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C2H3g01147 | 3:14,307,579-14,309,156 | + | C1H3g17152 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C2H3g26978 | 3:14,380,764-14,384,352 | - | C1H3g03234 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C2H3g09617 | 3:14,398,273-14,401,752 | - | C1H3g11733 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C2H3g01443 | 3:14,407,064-14,410,216 | + | C1H3g19183 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |