| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g29428 | 2:21,616,247-21,616,886 | - | C2H2g12810 | CX2g021639 | LOC_Os02g37970 | Os02g0592833 | OsFLZ5 | Detail |
| C1H2g00636 | 2:21,624,924-21,631,609 | - | C2H2g28811 | CX2g022606 | LOC_Os02g38010 | Os02g0593100 | - | Detail |
| C1H2g16543 | 2:21,632,597-21,633,617 | - | C2H2g28811 | CX2g022606 | LOC_Os02g38010 | Os02g0593100 | - | Detail |
| C1H2g02941 | 2:21,639,488-21,642,330 | + | C2H2g02538 | CX2g020754 | LOC_Os02g38020 | Os02g0593500 | - | Detail |
| C1H2g00528 | 2:21,643,605-21,644,001 | - | C2H2g07587 | CX2g020428 | LOC_Os02g38029 | Os02g0593400 | - | Detail |
| C1H2g31252 | 2:21,646,462-21,648,754 | + | C2H2g02659 | CX2g021015 | LOC_Os02g38040 | Os02g0593600 | OsIRL2 | Detail |
| C1H2g28738 | 2:21,649,341-21,655,066 | - | C2H2g02107 | CX2g022113 | LOC_Os02g38050 | Os02g0593700 | - | Detail |
| C1H2g05228 | 2:21,658,897-21,663,795 | + | C2H2g27414 | CX2g022962 | LOC_Os02g38060 | Os02g0593900 | - | Detail |
| C1H2g19613 | 2:21,667,711-21,672,962 | + | C2H2g28617 | CX2g020918 | LOC_Os02g38080 | Os02g0594100 | - | Detail |
| C1H2g26025 | 2:21,700,250-21,703,122 | + | C2H2g22920 | CX2g022653 | LOC_Os02g38120 | Os02g0594700 | OsBTBN3 | Detail |
| C1H2g03331 | 2:21,719,495-21,721,656 | - | C2H2g27568 | CX2g023488 | LOC_Os02g38130 | Os02g0594800 | An-4, OsSGL | Detail |
| C1H2g17655 | 2:21,723,314-21,724,509 | - | C2H4g03036 | CX2g022047 | - | - | - | Detail |
| C1H2g12247 | 2:21,727,717-21,729,917 | - | C2H2g08333 | CX2g020733 | LOC_Os02g38160 | Os02g0594900 | - | Detail |
| C1H2g09203 | 2:21,740,378-21,743,864 | - | C2H2g24282 | CX2g024257 | LOC_Os02g38160 | Os02g0595100 | - | Detail |
| C1H2g18043 | 2:21,758,412-21,759,312 | - | C2H2g12684 | CX2g021227 | LOC_Os02g38180 | Os02g0595300 | - | Detail |
| C1H2g28766 | 2:21,763,335-21,767,182 | - | C2H2g27779 | CX2g023998 | LOC_Os02g38200 | Os02g0595500 | - | Detail |
| C1H2g15529 | 2:21,773,164-21,776,791 | + | C2H2g13918 | CX2g023123 | LOC_Os02g38220 | Os02g0595800 | - | Detail |
| C1H2g13753 | 2:21,777,995-21,779,681 | - | C2H2g12990 | CX2g024625 | LOC_Os02g38230 | Os02g0595900 | NAR2.1, OsNAR2.1, OsNRT3.1A | Detail |
| C1H2g12816 | 2:21,783,797-21,786,809 | - | C2H2g05640 | CX2g021096 | LOC_Os02g38240 | Os02g0596000 | - | Detail |
| C1H2g21293 | 2:21,788,801-21,797,902 | - | C2H2g05424 | CX2g020732 | LOC_Os02g38250 | Os02g0596100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07837 | 3:12,240,186-12,240,422 | + | C1H3g29038 | - | - | - | - | Detail |
| C2H3g30335 | 3:12,245,811-12,246,437 | + | C1H3g24260 | CX3g028005 | LOC_Os03g24560 | Os03g0360300 | - | Detail |
| C2H3g23651 | 3:12,249,595-12,252,420 | + | C1H3g06016 | CX3g026622 | - | Os03g0202500 | - | Detail |
| C2H3g11576 | 3:12,259,279-12,263,067 | - | C1H3g10908 | CX3g025165 | LOC_Os03g24520 | Os03g0359700 | - | Detail |
| C2H3g27563 | 3:12,267,546-12,271,810 | - | C1H3g04236 | CX3g029301 | LOC_Os03g24580 | Os03g0360500 | - | Detail |
| C2H3g30143 | 3:12,278,164-12,281,650 | + | C1H3g00317 | CX3g028418 | LOC_Os03g24600 | Os03g0360700 | OsMSRB5 | Detail |
| C2H3g18552 | 3:12,283,269-12,286,896 | + | C1H3g00810 | CX3g030502 | LOC_Os03g24610 | Os03g0360800 | - | Detail |
| C2H3g08848 | 3:12,299,353-12,302,445 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g01009 | 3:12,311,712-12,314,711 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g10773 | 3:12,322,815-12,324,226 | - | C1H3g06434 | CX3g028227 | LOC_Os03g24650 | Os03g0362500 | - | Detail |
| C2H3g17062 | 3:12,325,139-12,325,479 | - | C1H3g14470 | CX3g028227 | LOC_Os03g24690 | Os03g0361500 | - | Detail |
| C2H3g13152 | 3:12,341,926-12,347,771 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24680 | Os03g0361600 | - | Detail |
| C2H3g10176 | 3:12,373,064-12,373,448 | + | - | - | - | Os05g0380200 | - | Detail |
| C2H3g09511 | 3:12,391,665-12,395,308 | - | C1H3g23561 | - | - | - | - | Detail |
| C2H3g25785 | 3:12,397,990-12,399,111 | - | C1H3g19660 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g04211 | 3:12,399,508-12,401,225 | - | C1H3g14470 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g13576 | 3:12,417,591-12,417,910 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24710 | Os03g0362032 | - | Detail |
| C2H3g17100 | 3:12,425,984-12,426,265 | + | C1H3g07323 | CX3g028193 | LOC_Os03g24720 | Os03g0362032 | - | Detail |
| C2H3g06450 | 3:12,426,879-12,429,300 | + | C1H3g06434 | CX3g028227 | LOC_Os03g24760 | Os03g0362500 | - | Detail |
| C2H3g08257 | 3:12,442,084-12,446,166 | - | C1H3g26242 | CX3g030811 | LOC_Os03g24650 | Os03g0361700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |