| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g19932 | 2:20,518,073-20,518,918 | + | C2H2g24305 | CX2g024727 | LOC_Os02g36140 | Os02g0570400 | OsDTC1, OsKSL3 | Detail |
| C1H2g28979 | 2:20,522,221-20,523,846 | + | C2H2g13056 | CX2g024727 | LOC_Os02g36140 | Os02g0570400 | OsDTC1, OsKSL3 | Detail |
| C1H2g26519 | 2:20,524,474-20,525,935 | + | C2H2g03370 | CX2g024727 | LOC_Os02g36285 | Os02g0570400 | OsDTC1, OsKSL3 | Detail |
| C1H2g27996 | 2:20,529,855-20,532,739 | + | C2H2g08598 | CX2g019614 | LOC_Os02g36150 | Os02g0570500 | - | Detail |
| C1H2g01402 | 2:20,537,087-20,539,652 | - | C2H2g05039 | CX2g023226 | LOC_Os02g36190 | Os02g0570700 | - | Detail |
| C1H2g21986 | 2:20,545,967-20,550,189 | - | - | - | - | - | - | Detail |
| C1H2g07162 | 2:20,578,454-20,584,791 | + | C2H2g17098 | CX2g021593 | LOC_Os02g36210 | Os02g0571100 | OsCPS2, Os-CPS2, OsCyc2, OsCPS2ent | Detail |
| C1H2g08132 | 2:20,586,835-20,587,890 | - | - | - | - | - | - | Detail |
| C1H2g03952 | 2:20,589,022-20,599,159 | - | C2H2g07065 | CX2g021871 | LOC_Os02g36220 | Os02g0571300 | OsKSL7 | Detail |
| C1H2g22902 | 2:20,617,446-20,619,066 | - | C2H2g07065 | CX2g021871 | LOC_Os02g36264 | Os02g0571800 | OsKSL9 | Detail |
| C1H2g02826 | 2:20,619,508-20,625,671 | - | C2H2g09109 | CX2g021871 | LOC_Os02g36264 | Os02g0571800 | OsKSL9 | Detail |
| C1H2g18768 | 2:20,639,765-20,641,079 | + | C2H2g16141 | CX2g024727 | LOC_Os02g36285 | Os02g0572050 | - | Detail |
| C1H2g17745 | 2:20,647,633-20,648,676 | - | C2H2g09753 | CX2g018873 | LOC_Os02g36320 | Os02g0572300 | - | Detail |
| C1H2g12070 | 2:20,650,475-20,651,894 | - | C2H2g01273 | - | - | Os02g0572300 | - | Detail |
| C1H2g26185 | 2:20,655,118-20,660,193 | - | C2H2g16620 | CX2g023356 | LOC_Os02g36340 | Os02g0572400 | - | Detail |
| C1H2g25932 | 2:20,677,538-20,679,197 | - | C2H2g00545 | CX2g023112 | LOC_Os02g36350 | Os02g0572600 | - | Detail |
| C1H2g10452 | 2:20,688,582-20,691,932 | - | C2H2g01996 | CX2g023654 | LOC_Os02g36360 | Os02g0572900 | - | Detail |
| C1H2g13546 | 2:20,709,852-20,713,652 | + | C2H2g05333 | CX2g018889 | LOC_Os02g36380 | Os02g0573200 | OsCRY1a, OsCRY1, CRY1a, CRY2 | Detail |
| C1H2g14408 | 2:20,714,228-20,719,715 | - | C2H2g01642 | CX2g019460 | LOC_Os02g36390 | Os02g0573300 | - | Detail |
| C1H2g24873 | 2:20,720,518-20,724,732 | - | C2H2g30509 | CX2g024276 | LOC_Os02g36400 | Os02g0573400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20974 | 3:11,018,085-11,024,624 | + | C1H3g19042 | CX3g026559 | LOC_Os03g21720 | Os03g0335300 | - | Detail |
| C2H3g19361 | 3:11,027,303-11,031,131 | + | C1H3g07741 | CX3g030985 | LOC_Os03g21730 | Os03g0335500 | - | Detail |
| C2H3g14995 | 3:11,038,203-11,047,766 | + | C1H3g12959 | CX3g025822 | LOC_Os03g21740 | Os03g0335600 | - | Detail |
| C2H3g07010 | 3:11,052,335-11,054,537 | - | C1H3g23089 | CX3g026449 | LOC_Os03g21790 | Os03g0336100 | FLOC3 | Detail |
| C2H3g10640 | 3:11,057,191-11,060,729 | + | C1H3g19738 | CX3g026687 | LOC_Os03g21800 | Os03g0336200 | - | Detail |
| C2H3g27830 | 3:11,063,392-11,073,976 | + | C1H3g27626 | CX3g028160 | LOC_Os03g21810 | Os03g0336300 | - | Detail |
| C2H3g18341 | 3:11,074,632-11,075,525 | - | C1H3g30217 | CX3g030935 | LOC_Os03g21820 | Os03g0336400 | - | Detail |
| C2H3g17317 | 3:11,088,575-11,091,662 | + | C1H3g28885 | CX3g028604 | LOC_Os03g21830 | Os03g0336500 | - | Detail |
| C2H3g25854 | 3:11,092,828-11,096,350 | - | C1H3g10280 | CX3g028387 | LOC_Os03g21840 | Os03g0336600 | - | Detail |
| C2H3g04362 | 3:11,100,985-11,103,212 | - | C1H3g24720 | - | LOC_Os03g04150 | - | - | Detail |
| C2H3g05433 | 3:11,113,157-11,120,267 | + | C1H3g01271 | CX3g031093 | LOC_Os03g21850 | Os03g0336700 | - | Detail |
| C2H3g01707 | 3:11,140,669-11,141,356 | - | C1H3g00780 | CX3g028881 | - | - | - | Detail |
| C2H3g29585 | 3:11,142,018-11,143,135 | + | - | - | - | - | - | Detail |
| C2H3g03273 | 3:11,144,532-11,154,769 | + | C1H3g03171 | CX3g031266 | LOC_Os03g21890 | Os03g0337500 | OsHAK8 | Detail |
| C2H3g09138 | 3:11,156,063-11,160,757 | - | C1H3g23175 | CX3g025972 | LOC_Os03g21914 | Os03g0714400 | - | Detail |
| C2H3g27608 | 3:11,162,202-11,164,456 | - | C1H3g14863 | CX3g028145 | LOC_Os03g21940 | Os03g0337800 | - | Detail |
| C2H3g02212 | 3:11,165,986-11,172,178 | - | C1H3g25051 | CX3g030549 | LOC_Os03g21950 | Os03g0337900 | - | Detail |
| C2H3g08593 | 3:11,176,431-11,179,474 | - | C1H3g24711 | CX3g028858 | LOC_Os03g21960 | Os03g0338000 | - | Detail |
| C2H3g29715 | 3:11,208,123-11,210,355 | + | C1H3g23812 | CX3g025638 | LOC_Os03g21970 | Os03g0338400 | - | Detail |
| C2H3g29506 | 3:11,212,933-11,216,502 | - | C1H3g31030 | CX3g030282 | LOC_Os03g21980 | Os03g0338600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |