| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g16509 | 2:16,103,943-16,113,428 | + | C2H2g01590 | CX2g023813 | LOC_Os02g28074 | Os02g0481900 | OsXrn4-L | Detail |
| C1H2g08443 | 2:16,130,248-16,133,466 | - | C2H4g17952 | CX2g023954 | - | - | - | Detail |
| C1H2g01179 | 2:16,135,766-16,138,742 | - | C2H6g28052 | - | - | - | - | Detail |
| C1H2g27187 | 2:16,296,624-16,298,505 | + | - | CX2g023320 | - | - | - | Detail |
| C1H2g26062 | 2:16,353,658-16,355,071 | + | C2H2g14927 | CX2g024525 | LOC_Os02g28200 | Os02g0483800 | - | Detail |
| C1H2g01888 | 2:16,363,422-16,364,765 | + | C2H2g29077 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C1H2g23779 | 2:16,364,793-16,366,647 | + | - | - | - | Os02g0483500 | - | Detail |
| C1H2g25526 | 2:16,380,890-16,382,317 | + | C2H2g29077 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C1H2g22601 | 2:16,397,141-16,397,380 | + | C2H2g02644 | CX2g020796 | LOC_Os02g28450 | - | - | Detail |
| C1H2g17511 | 2:16,411,618-16,413,027 | + | C2H2g17764 | CX2g024525 | LOC_Os02g28340 | Os02g0485000 | - | Detail |
| C1H2g04465 | 2:16,436,902-16,438,991 | - | C2H2g19393 | - | - | - | - | Detail |
| C1H2g19424 | 2:16,438,993-16,439,250 | - | C2H2g19393 | - | - | - | - | Detail |
| C1H2g15604 | 2:16,469,267-16,472,759 | + | C2H2g27926 | CX2g020358 | LOC_Os02g28580 | Os02g0487300 | - | Detail |
| C1H2g04842 | 2:16,484,513-16,486,208 | + | C2H2g16337 | CX2g020358 | LOC_Os02g28660 | Os02g0487300 | - | Detail |
| C1H2g29692 | 2:16,494,003-16,495,799 | + | C2H2g28503 | CX2g019368 | LOC_Os02g28680 | Os02g0487300 | - | Detail |
| C1H2g25610 | 2:16,502,157-16,505,850 | - | C2H2g13549 | CX2g019609 | LOC_Os02g28720 | Os02g0488600 | - | Detail |
| C1H2g24376 | 2:16,541,176-16,543,724 | + | C2H2g09159 | CX2g019939 | LOC_Os02g28810 | Os02g0489400 | - | Detail |
| C1H2g28295 | 2:16,545,554-16,546,525 | + | C2H2g07433 | CX2g021075 | LOC_Os02g28820 | Os02g0489500 | - | Detail |
| C1H2g25383 | 2:16,546,808-16,547,111 | + | - | - | - | - | - | Detail |
| C1H2g07614 | 2:16,549,502-16,561,827 | - | C2H2g29338 | CX2g022951 | LOC_Os02g28830 | Os02g0489550 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g19435 | 4:22,521,930-22,525,097 | + | C1H4g14520 | CX4g031957 | LOC_Os04g44110 | Os04g0521800 | - | Detail |
| C2H4g18486 | 4:22,525,268-22,525,756 | - | - | - | - | Os04g0521900 | - | Detail |
| C2H4g20077 | 4:22,534,017-22,534,349 | + | C1H4g13540 | CX4g034351 | LOC_Os04g44130 | Os04g0522100 | CAL2 | Detail |
| C2H4g17950 | 4:22,544,733-22,545,482 | - | C1H4g14130 | CX4g035905 | LOC_Os04g44150 | Os04g0522500 | GA2ox6, OsGA2ox6 | Detail |
| C2H4g23320 | 4:22,547,687-22,548,330 | - | C1H4g20746 | CX4g035905 | LOC_Os04g44150 | Os04g0522500 | GA2ox6, OsGA2ox6 | Detail |
| C2H4g07715 | 4:22,569,851-22,572,962 | + | C1H4g23550 | CX4g032754 | LOC_Os04g44190 | Os04g0522800 | - | Detail |
| C2H4g09820 | 4:22,574,353-22,575,002 | + | C1H4g25974 | CX4g032876 | LOC_Os04g44200 | Os04g0523000 | - | Detail |
| C2H4g17435 | 4:22,575,109-22,580,142 | - | C1H4g18322 | CX4g032188 | LOC_Os04g44210 | Os04g0523100 | - | Detail |
| C2H4g30482 | 4:22,586,419-22,588,702 | - | C1H4g27685 | CX4g033622 | LOC_Os04g44220 | Os04g0523200 | - | Detail |
| C2H4g08365 | 4:22,590,483-22,590,956 | - | C1H4g26193 | CX4g033622 | LOC_Os04g44220 | Os04g0523350 | - | Detail |
| C2H4g19772 | 4:22,595,491-22,595,874 | - | - | CX4g035364 | - | - | - | Detail |
| C2H4g21642 | 4:22,598,615-22,604,413 | + | C1H4g02749 | CX4g033677 | LOC_Os04g44230 | Os04g0523500 | OsCKX8 | Detail |
| C2H4g25107 | 4:22,607,303-22,608,808 | - | C1H4g16494 | CX4g034590 | LOC_Os04g44240 | Os04g0523600 | - | Detail |
| C2H4g28789 | 4:22,611,650-22,615,059 | - | C1H4g13330 | - | LOC_Os04g51490 | Os04g0132900 | - | Detail |
| C2H4g13084 | 4:22,618,354-22,620,895 | - | C1H4g19013 | CX4g035815 | LOC_Os01g62100 | - | - | Detail |
| C2H4g14631 | 4:22,624,546-22,626,720 | - | C1H4g16494 | CX4g034590 | LOC_Os04g44250 | Os04g0523600 | - | Detail |
| C2H4g00229 | 4:22,627,770-22,628,705 | + | - | - | LOC_Os04g44260 | Os04g0524136 | - | Detail |
| C2H4g21424 | 4:22,634,411-22,635,207 | + | C1H4g20304 | CX4g035143 | LOC_Os04g44280 | Os04g0524300 | RR5, rr5, OsRR5, Rra4, OsRRA4 | Detail |
| C2H4g00588 | 4:22,658,904-22,661,183 | + | C1H4g10194 | CX4g034041 | LOC_Os04g44290 | Os04g0524400 | - | Detail |
| C2H4g16476 | 4:22,662,716-22,666,298 | - | C1H4g06080 | CX4g031624 | LOC_Os04g44300 | Os04g0524500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |