| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g16509 | 2:16,103,943-16,113,428 | + | C2H2g01590 | CX2g023813 | LOC_Os02g28074 | Os02g0481900 | OsXrn4-L | Detail |
| C1H2g08443 | 2:16,130,248-16,133,466 | - | C2H4g17952 | CX2g023954 | - | - | - | Detail |
| C1H2g01179 | 2:16,135,766-16,138,742 | - | C2H6g28052 | - | - | - | - | Detail |
| C1H2g27187 | 2:16,296,624-16,298,505 | + | - | CX2g023320 | - | - | - | Detail |
| C1H2g26062 | 2:16,353,658-16,355,071 | + | C2H2g14927 | CX2g024525 | LOC_Os02g28200 | Os02g0483800 | - | Detail |
| C1H2g01888 | 2:16,363,422-16,364,765 | + | C2H2g29077 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C1H2g23779 | 2:16,364,793-16,366,647 | + | - | - | - | Os02g0483500 | - | Detail |
| C1H2g25526 | 2:16,380,890-16,382,317 | + | C2H2g29077 | CX2g024525 | LOC_Os02g28170 | Os02g0483500 | - | Detail |
| C1H2g22601 | 2:16,397,141-16,397,380 | + | C2H2g02644 | CX2g020796 | LOC_Os02g28450 | - | - | Detail |
| C1H2g17511 | 2:16,411,618-16,413,027 | + | C2H2g17764 | CX2g024525 | LOC_Os02g28340 | Os02g0485000 | - | Detail |
| C1H2g04465 | 2:16,436,902-16,438,991 | - | C2H2g19393 | - | - | - | - | Detail |
| C1H2g19424 | 2:16,438,993-16,439,250 | - | C2H2g19393 | - | - | - | - | Detail |
| C1H2g15604 | 2:16,469,267-16,472,759 | + | C2H2g27926 | CX2g020358 | LOC_Os02g28580 | Os02g0487300 | - | Detail |
| C1H2g04842 | 2:16,484,513-16,486,208 | + | C2H2g16337 | CX2g020358 | LOC_Os02g28660 | Os02g0487300 | - | Detail |
| C1H2g29692 | 2:16,494,003-16,495,799 | + | C2H2g28503 | CX2g019368 | LOC_Os02g28680 | Os02g0487300 | - | Detail |
| C1H2g25610 | 2:16,502,157-16,505,850 | - | C2H2g13549 | CX2g019609 | LOC_Os02g28720 | Os02g0488600 | - | Detail |
| C1H2g24376 | 2:16,541,176-16,543,724 | + | C2H2g09159 | CX2g019939 | LOC_Os02g28810 | Os02g0489400 | - | Detail |
| C1H2g28295 | 2:16,545,554-16,546,525 | + | C2H2g07433 | CX2g021075 | LOC_Os02g28820 | Os02g0489500 | - | Detail |
| C1H2g25383 | 2:16,546,808-16,547,111 | + | - | - | - | - | - | Detail |
| C1H2g07614 | 2:16,549,502-16,561,827 | - | C2H2g29338 | CX2g022951 | LOC_Os02g28830 | Os02g0489550 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03998 | 1:2,164,077-2,165,131 | - | C1H1g29078 | CX1g003888 | LOC_Os01g05370 | Os01g0144800 | - | Detail |
| C2H1g05408 | 1:2,174,818-2,178,246 | + | C1H1g29078 | CX1g003888 | LOC_Os01g05410 | Os01g0147001 | - | Detail |
| C2H1g08018 | 1:2,185,334-2,189,822 | + | C1H1g18605 | CX1g000323 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| C2H1g25573 | 1:2,191,220-2,194,402 | + | C1H1g08705 | CX1g001325 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| C2H1g12465 | 1:2,194,554-2,196,403 | - | C1H1g07217 | CX1g003030 | LOC_Os01g05440 | Os01g0147400 | - | Detail |
| C2H1g27793 | 1:2,197,356-2,199,409 | - | C1H1g03816 | - | LOC_Os01g05450 | Os01g0147600 | - | Detail |
| C2H1g00931 | 1:2,200,826-2,203,456 | - | C1H1g25686 | - | LOC_Os01g05460 | Os01g0147600 | - | Detail |
| C2H1g02244 | 1:2,205,153-2,207,498 | - | C1H1g30607 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g25353 | 1:2,210,513-2,219,278 | - | C1H1g11928 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C2H1g29480 | 1:2,221,494-2,225,565 | - | C1H1g17304 | CX1g005120 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| C2H1g30066 | 1:2,226,864-2,230,987 | - | C1H1g08404 | CX1g006525 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| C2H1g25150 | 1:2,236,272-2,249,202 | + | C1H1g03903 | CX1g001423 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| C2H1g10498 | 1:2,256,405-2,259,371 | - | C1H1g24472 | CX1g005368 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| C2H1g18971 | 1:2,261,730-2,262,191 | + | C1H1g09766 | CX1g005739 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| C2H1g06791 | 1:2,263,340-2,266,739 | - | C1H1g22469 | CX1g006643 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| C2H1g28846 | 1:2,268,550-2,269,982 | - | C1H1g18521 | - | LOC_Os01g05650 | Os01g0149800 | - | Detail |
| C2H1g25044 | 1:2,274,627-2,278,471 | - | C1H1g17924 | CX1g006502 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| C2H1g00511 | 1:2,283,854-2,287,505 | - | C1H1g30008 | CX1g002286 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| C2H1g17834 | 1:2,289,627-2,293,258 | + | C1H1g15806 | CX1g000079 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| C2H1g21300 | 1:2,294,207-2,296,973 | + | C1H1g24721 | CX4g035052 | LOC_Os01g05694 | Os01g0150200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |