| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g09834 | 1:9,111,388-9,111,723 | + | C2H1g08442 | - | - | - | - | Detail |
| C1H1g31050 | 1:9,113,543-9,122,637 | + | C2H1g22354 | CX1g005156 | LOC_Os01g18150 | Os01g0284300 | - | Detail |
| C1H1g09627 | 1:9,124,603-9,125,372 | - | C2H1g13905 | CX1g002731 | LOC_Os01g18170 | Os01g0284500 | OsGER4 | Detail |
| C1H1g10680 | 1:9,132,796-9,135,738 | + | C2H1g17254 | CX1g000924 | LOC_Os01g18210 | Os01g0284700 | - | Detail |
| C1H1g13588 | 1:9,141,749-9,142,612 | - | C2H1g07308 | CX1g001111 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| C1H1g17641 | 1:9,154,576-9,155,375 | - | C2H1g20440 | CX1g003253 | LOC_Os01g18230 | Os01g0759700 | - | Detail |
| C1H1g06479 | 1:9,163,852-9,166,083 | - | C2H1g10789 | CX1g006251 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| C1H1g05697 | 1:9,211,047-9,214,437 | + | C2H1g03219 | CX1g000217 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| C1H1g18723 | 1:9,219,612-9,223,119 | - | C2H1g23388 | CX1g006989 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| C1H1g02909 | 1:9,238,369-9,239,842 | - | C2H1g25947 | CX1g001405 | LOC_Os11g02650 | - | - | Detail |
| C1H1g25972 | 1:9,241,032-9,242,334 | - | C2H1g12260 | - | LOC_Os01g13050 | Os01g0861400 | - | Detail |
| C1H1g02936 | 1:9,244,036-9,247,610 | + | C2H1g13264 | CX1g004036 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| C1H1g02001 | 1:9,260,143-9,263,439 | + | C2H1g18493 | CX1g000296 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| C1H1g26094 | 1:9,285,715-9,286,050 | + | C2H1g16973 | CX1g002314 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| C1H1g20358 | 1:9,288,357-9,288,734 | - | C2H1g04657 | CX1g007034 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| C1H1g26001 | 1:9,289,217-9,289,708 | - | C2H1g10428 | CX1g007034 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| C1H1g01375 | 1:9,324,450-9,324,810 | - | C2H1g21581 | CX1g005603 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| C1H1g15975 | 1:9,340,737-9,341,039 | - | C2H1g03324 | - | LOC_Os01g18490 | Os01g0288800 | - | Detail |
| C1H1g27658 | 1:9,376,678-9,383,015 | + | C2H1g00434 | CX1g004171 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| C1H1g31040 | 1:9,410,229-9,411,702 | - | C2H1g15794 | CX1g002453 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g18120 | 9:3,590,738-3,596,222 | + | C1H9g25197 | CX9g057349 | LOC_Os09g07830 | Os09g0252100 | - | Detail |
| C2H9g17789 | 9:3,604,821-3,607,087 | + | C1H9g01757 | CX9g056942 | - | - | - | Detail |
| C2H9g02510 | 9:3,618,908-3,638,300 | + | C1H9g01122 | CX9g056025 | LOC_Os09g07900 | Os09g0252800 | - | Detail |
| C2H9g27366 | 9:3,644,428-3,646,861 | + | C1H9g06245 | - | LOC_Os09g07920 | Os09g0253000 | - | Detail |
| C2H9g19417 | 9:3,662,734-3,665,470 | - | C1H9g08288 | CX9g057312 | LOC_Os09g07990 | - | - | Detail |
| C2H9g20161 | 9:3,672,778-3,673,575 | + | C1H9g13981 | CX9g056656 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| C2H9g25594 | 9:3,684,569-3,688,662 | - | C1H9g10685 | CX9g057312 | LOC_Os09g07940 | - | - | Detail |
| C2H9g12091 | 9:3,694,846-3,695,640 | + | C1H9g25599 | CX9g055285 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| C2H9g07409 | 9:3,713,529-3,719,008 | + | C1H9g14679 | CX9g057173 | LOC_Os09g08072 | Os09g0255000 | - | Detail |
| C2H9g00890 | 9:3,726,330-3,726,692 | - | - | CX9g055327 | LOC_Os09g08100 | Os09g0255200 | - | Detail |
| C2H9g01652 | 9:3,736,210-3,736,980 | + | C1H9g08895 | CX9g057173 | LOC_Os09g08072 | Os09g0255300 | - | Detail |
| C2H9g30657 | 9:3,744,655-3,745,841 | + | C1H9g14679 | CX9g057173 | LOC_Os09g08072 | Os09g0255000 | - | Detail |
| C2H9g05685 | 9:3,756,556-3,759,664 | - | C1H9g16230 | CX9g056657 | LOC_Os09g08130 | Os09g0255400 | - | Detail |
| C2H9g04238 | 9:3,780,723-3,783,373 | + | C1H9g01132 | - | - | - | - | Detail |
| C2H9g13370 | 9:3,787,124-3,788,809 | + | - | CX9g057939 | LOC_Os09g08160 | Os09g0255900 | - | Detail |
| C2H9g03209 | 9:3,795,642-3,796,455 | - | - | CX9g056239 | - | - | - | Detail |
| C2H9g06945 | 9:3,833,475-3,834,317 | + | - | CX9g057570 | LOC_Os09g08190 | Os09g0256100 | - | Detail |
| C2H9g28123 | 9:3,837,213-3,837,544 | + | - | - | - | - | - | Detail |
| C2H9g28424 | 9:3,837,693-3,838,094 | + | - | CX9g055086 | - | - | - | Detail |
| C2H9g20708 | 9:3,847,959-3,848,756 | - | C1H9g13981 | CX9g057129 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |