| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04839 | 2:9,286,424-9,292,908 | - | C2H2g06770 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C1H2g13080 | 2:9,294,659-9,299,722 | + | C2H2g12255 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C1H2g20851 | 2:9,309,489-9,316,352 | + | C2H2g07148 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C1H2g27766 | 2:9,321,715-9,322,970 | + | C2H2g16988 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C1H2g18414 | 2:9,323,805-9,330,033 | - | C2H2g25493 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C1H2g28570 | 2:9,352,531-9,357,435 | - | C2H2g11418 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C1H2g09318 | 2:9,365,893-9,369,178 | - | C2H2g13253 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C1H2g06211 | 2:9,370,161-9,378,467 | - | C2H2g02640 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C1H2g04949 | 2:9,406,805-9,413,716 | - | C2H2g21214 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C1H2g26261 | 2:9,423,589-9,427,459 | + | C2H2g07248 | CX2g020060 | - | Os08g0106700 | - | Detail |
| C1H2g06748 | 2:9,430,997-9,436,193 | + | C2H2g23233 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C1H2g21417 | 2:9,437,083-9,438,617 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0553000 | - | Detail |
| C1H2g09887 | 2:9,438,752-9,439,781 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C1H2g04601 | 2:9,447,295-9,452,328 | + | C2H2g09294 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C1H2g17404 | 2:9,453,585-9,453,983 | - | - | CX2g024163 | LOC_Os02g17770 | - | - | Detail |
| C1H2g04831 | 2:9,456,074-9,467,318 | - | C2H2g03135 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| C1H2g21563 | 2:9,490,847-9,493,855 | + | C2H2g23443 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C1H2g29701 | 2:9,497,516-9,502,072 | + | C2H2g02230 | CX2g020861 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| C1H2g07597 | 2:9,512,281-9,514,682 | - | - | - | - | - | - | Detail |
| C1H2g23928 | 2:9,520,031-9,521,283 | + | C2H2g21745 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g26789 | 4:30,762,822-30,763,294 | + | C1H4g27209 | CX4g035906 | LOC_Os05g34770 | Os04g0693050 | - | Detail |
| C2H4g26706 | 4:30,767,040-30,773,162 | + | C1H4g15102 | CX4g031810 | - | Os04g0693000 | - | Detail |
| C2H4g19793 | 4:30,774,143-30,778,612 | + | C1H4g08380 | CX4g032443 | - | Os04g0692900 | - | Detail |
| C2H4g24362 | 4:30,783,036-30,783,849 | - | C1H4g04148 | CX4g033816 | - | Os04g0693200 | - | Detail |
| C2H4g20903 | 4:30,784,112-30,785,087 | + | C1H4g04148 | CX4g034206 | - | - | - | Detail |
| C2H4g14683 | 4:30,785,393-30,787,243 | + | C1H4g04148 | CX4g033816 | - | Os04g0693200 | - | Detail |
| C2H4g20219 | 4:30,789,585-30,791,421 | - | C1H4g22032 | CX4g036416 | - | Os04g0693300 | - | Detail |
| C2H5g01421 | 5:11,333-11,990 | + | C1H5g22141 | - | LOC_Os05g00994 | Os05g0100016 | - | Detail |
| C2H5g18965 | 5:23,485-24,682 | + | C1H5g01813 | - | - | - | - | Detail |
| C2H5g21166 | 5:25,018-28,373 | - | C1H5g12346 | CX5g037561 | - | - | - | Detail |
| C2H5g29890 | 5:29,553-31,106 | + | C1H5g00652 | CX5g039036 | LOC_Os05g01010 | Os05g0100100 | - | Detail |
| C2H5g01522 | 5:33,439-42,067 | - | C1H5g10737 | CX5g040413 | LOC_Os05g01020 | Os05g0100500 | - | Detail |
| C2H5g21354 | 5:53,236-58,318 | + | C1H5g05944 | CX5g037647 | LOC_Os05g01030 | Os05g0100600 | - | Detail |
| C2H5g14491 | 5:58,324-62,736 | - | C1H5g06950 | CX5g037545 | LOC_Os05g01040 | Os05g0218400 | Z15 | Detail |
| C2H5g06043 | 5:63,965-65,248 | - | C1H5g22050 | CX5g036823 | LOC_Os05g01050 | Os05g0100800 | - | Detail |
| C2H5g28102 | 5:66,460-74,121 | - | C1H5g13271 | CX5g038924 | LOC_Os05g01060 | Os05g0100900 | - | Detail |
| C2H5g25832 | 5:79,988-84,014 | + | C1H5g18989 | CX5g040083 | LOC_Os05g01090 | Os05g0101200 | OsPEX14, OsPex14p | Detail |
| C2H5g05651 | 5:84,377-85,120 | - | C1H5g01427 | CX5g039249 | LOC_Os05g01100 | Os05g0101300 | - | Detail |
| C2H5g14269 | 5:85,983-86,264 | - | C1H5g27475 | CX5g037704 | LOC_Os05g01110 | Os05g0101400 | - | Detail |
| C2H5g08405 | 5:87,470-88,024 | - | C1H5g30080 | CX5g037704 | LOC_Os05g01110 | Os05g0101400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |