| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04839 | 2:9,286,424-9,292,908 | - | C2H2g06770 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C1H2g13080 | 2:9,294,659-9,299,722 | + | C2H2g12255 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C1H2g20851 | 2:9,309,489-9,316,352 | + | C2H2g07148 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C1H2g27766 | 2:9,321,715-9,322,970 | + | C2H2g16988 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C1H2g18414 | 2:9,323,805-9,330,033 | - | C2H2g25493 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C1H2g28570 | 2:9,352,531-9,357,435 | - | C2H2g11418 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C1H2g09318 | 2:9,365,893-9,369,178 | - | C2H2g13253 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C1H2g06211 | 2:9,370,161-9,378,467 | - | C2H2g02640 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C1H2g04949 | 2:9,406,805-9,413,716 | - | C2H2g21214 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C1H2g26261 | 2:9,423,589-9,427,459 | + | C2H2g07248 | CX2g020060 | - | Os08g0106700 | - | Detail |
| C1H2g06748 | 2:9,430,997-9,436,193 | + | C2H2g23233 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C1H2g21417 | 2:9,437,083-9,438,617 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0553000 | - | Detail |
| C1H2g09887 | 2:9,438,752-9,439,781 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C1H2g04601 | 2:9,447,295-9,452,328 | + | C2H2g09294 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C1H2g17404 | 2:9,453,585-9,453,983 | - | - | CX2g024163 | LOC_Os02g17770 | - | - | Detail |
| C1H2g04831 | 2:9,456,074-9,467,318 | - | C2H2g03135 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| C1H2g21563 | 2:9,490,847-9,493,855 | + | C2H2g23443 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C1H2g29701 | 2:9,497,516-9,502,072 | + | C2H2g02230 | CX2g020861 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| C1H2g07597 | 2:9,512,281-9,514,682 | - | - | - | - | - | - | Detail |
| C1H2g23928 | 2:9,520,031-9,521,283 | + | C2H2g21745 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g11402 | 3:29,794,380-29,799,968 | + | C1H3g13683 | CX3g031049 | LOC_Os03g57100 | Os03g0784400 | - | Detail |
| C2H3g07899 | 3:29,800,210-29,805,087 | - | C1H3g10935 | CX3g030487 | LOC_Os03g57110 | Os03g0784500 | - | Detail |
| C2H3g13132 | 3:29,807,102-29,809,604 | - | C1H3g05217 | CX3g029787 | LOC_Os03g57120 | Os03g0784700 | - | Detail |
| C2H3g20434 | 3:29,811,787-29,817,313 | - | C1H3g28643 | CX3g028010 | LOC_Os03g57130 | Os03g0784800 | - | Detail |
| C2H3g13858 | 3:29,821,310-29,823,272 | - | C1H3g24334 | CX3g030089 | LOC_Os03g57140 | Os03g0784900 | - | Detail |
| C2H3g24386 | 3:29,827,241-29,835,794 | - | C1H3g27734 | CX3g029863 | LOC_Os03g57160 | Os03g0785300 | - | Detail |
| C2H3g16096 | 3:29,836,112-29,838,337 | + | C1H3g31468 | CX3g025222 | LOC_Os03g57170 | Os03g0785500 | - | Detail |
| C2H3g04828 | 3:29,860,532-29,863,301 | + | C1H3g09812 | CX3g026845 | LOC_Os03g57210 | Os03g0786000 | - | Detail |
| C2H3g03414 | 3:29,864,625-29,868,137 | + | C1H3g18801 | CX3g026915 | LOC_Os03g57220 | Os03g0786100 | - | Detail |
| C2H3g29782 | 3:29,889,346-29,893,615 | - | C1H3g21165 | CX3g028697 | LOC_Os03g57260 | Os03g0786500 | - | Detail |
| C2H3g21493 | 3:29,897,856-29,903,093 | + | C1H3g31737 | CX3g030417 | LOC_Os03g57280 | Os03g0786700 | - | Detail |
| C2H3g10038 | 3:29,904,015-29,911,113 | + | C1H3g24529 | CX3g028623 | LOC_Os03g57290 | Os03g0786800 | OsCUL4 | Detail |
| C2H3g05716 | 3:29,911,514-29,922,874 | + | C1H3g09796 | CX3g029095 | LOC_Os03g57300 | Os03g0786900 | - | Detail |
| C2H3g27192 | 3:29,925,945-29,926,940 | + | C1H3g02488 | CX3g028386 | LOC_Os03g57310 | Os03g0787000 | OsSYP121 | Detail |
| C2H3g21961 | 3:29,927,425-29,929,638 | - | C1H3g16088 | CX3g030867 | LOC_Os03g57320 | Os03g0787100 | - | Detail |
| C2H3g21062 | 3:29,930,700-29,934,610 | - | C1H3g27493 | CX3g026667 | LOC_Os03g57330 | Os03g0787200 | - | Detail |
| C2H3g10560 | 3:29,943,017-29,943,547 | + | - | - | - | - | - | Detail |
| C2H3g19623 | 3:29,944,722-29,947,334 | + | C1H3g15177 | CX3g029651 | LOC_Os03g57340 | Os03g0787300 | OsDjA5 | Detail |
| C2H3g03483 | 3:29,951,553-29,952,355 | - | C1H3g04736 | CX3g028358 | LOC_Os03g57360 | Os03g0813700 | - | Detail |
| C2H3g16218 | 3:29,960,956-29,961,579 | + | C1H3g02833 | CX3g028483 | LOC_Os03g57410 | Os03g0788100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |