| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04839 | 2:9,286,424-9,292,908 | - | C2H2g06770 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C1H2g13080 | 2:9,294,659-9,299,722 | + | C2H2g12255 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C1H2g20851 | 2:9,309,489-9,316,352 | + | C2H2g07148 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C1H2g27766 | 2:9,321,715-9,322,970 | + | C2H2g16988 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C1H2g18414 | 2:9,323,805-9,330,033 | - | C2H2g25493 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C1H2g28570 | 2:9,352,531-9,357,435 | - | C2H2g11418 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C1H2g09318 | 2:9,365,893-9,369,178 | - | C2H2g13253 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C1H2g06211 | 2:9,370,161-9,378,467 | - | C2H2g02640 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C1H2g04949 | 2:9,406,805-9,413,716 | - | C2H2g21214 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C1H2g26261 | 2:9,423,589-9,427,459 | + | C2H2g07248 | CX2g020060 | - | Os08g0106700 | - | Detail |
| C1H2g06748 | 2:9,430,997-9,436,193 | + | C2H2g23233 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C1H2g21417 | 2:9,437,083-9,438,617 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0553000 | - | Detail |
| C1H2g09887 | 2:9,438,752-9,439,781 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C1H2g04601 | 2:9,447,295-9,452,328 | + | C2H2g09294 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C1H2g17404 | 2:9,453,585-9,453,983 | - | - | CX2g024163 | LOC_Os02g17770 | - | - | Detail |
| C1H2g04831 | 2:9,456,074-9,467,318 | - | C2H2g03135 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| C1H2g21563 | 2:9,490,847-9,493,855 | + | C2H2g23443 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C1H2g29701 | 2:9,497,516-9,502,072 | + | C2H2g02230 | CX2g020861 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| C1H2g07597 | 2:9,512,281-9,514,682 | - | - | - | - | - | - | Detail |
| C1H2g23928 | 2:9,520,031-9,521,283 | + | C2H2g21745 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g23962 | 3:8,134,713-8,139,261 | + | C1H3g08484 | CX3g026595 | LOC_Os03g16790 | Os03g0275400 | - | Detail |
| C2H3g22357 | 3:8,140,834-8,143,728 | - | C1H3g29048 | CX3g028725 | LOC_Os03g16800 | Os03g0275500 | - | Detail |
| C2H3g09736 | 3:8,154,560-8,160,033 | + | C1H3g28405 | CX3g030952 | LOC_Os03g16824 | Os03g0275900 | - | Detail |
| C2H3g10703 | 3:8,186,051-8,187,519 | - | C1H3g20662 | CX3g029620 | LOC_Os03g16850 | Os03g0276300 | - | Detail |
| C2H3g25748 | 3:8,197,971-8,201,391 | + | C1H3g15079 | CX3g026076 | LOC_Os03g16860 | Os03g0276500 | - | Detail |
| C2H3g05747 | 3:8,201,710-8,204,167 | - | C1H3g15631 | CX3g028681 | LOC_Os03g16870 | Os03g0276600 | - | Detail |
| C2H3g19968 | 3:8,204,306-8,205,868 | + | C1H3g26015 | CX3g027299 | LOC_Os03g16874 | Os03g0276700 | - | Detail |
| C2H3g18002 | 3:8,206,382-8,209,071 | - | C1H3g30543 | CX3g030385 | LOC_Os03g16880 | Os03g0276800 | - | Detail |
| C2H3g17099 | 3:8,209,631-8,213,794 | - | C1H3g16525 | CX3g030171 | LOC_Os03g16890 | Os03g0276900 | - | Detail |
| C2H3g11000 | 3:8,218,235-8,221,421 | - | C1H3g14663 | CX3g026295 | LOC_Os03g16900 | Os03g0277000 | OsGDI3 | Detail |
| C2H3g13683 | 3:8,227,829-8,229,448 | + | C1H3g00724 | CX3g025051 | LOC_Os03g16910 | Os03g0277100 | - | Detail |
| C2H3g22367 | 3:8,238,699-8,241,299 | - | C1H3g31204 | CX3g029302 | LOC_Os03g16920 | Os03g0277300 | - | Detail |
| C2H3g30326 | 3:8,242,860-8,243,777 | - | C1H3g02748 | CX3g028405 | - | - | - | Detail |
| C2H3g22094 | 3:8,243,931-8,244,684 | - | C1H3g11982 | CX3g027598 | LOC_Os03g16940 | Os03g0277500 | OsGLYI3 | Detail |
| C2H3g14605 | 3:8,247,137-8,247,962 | - | C1H3g12989 | CX3g029379 | LOC_Os03g16950 | Os03g0277600 | - | Detail |
| C2H3g07396 | 3:8,251,225-8,252,038 | - | C1H3g21064 | CX3g026822 | LOC_Os03g16960 | Os03g0277700 | - | Detail |
| C2H3g01539 | 3:8,259,009-8,263,113 | + | C1H3g04687 | CX3g030561 | LOC_Os03g16980 | Os03g0278000 | - | Detail |
| C2H3g08917 | 3:8,267,489-8,270,953 | + | C1H3g07237 | CX3g025505 | LOC_Os03g17000 | Os03g0278200 | - | Detail |
| C2H3g03680 | 3:8,271,660-8,275,193 | - | C1H3g25194 | CX3g027017 | LOC_Os03g17010 | Os03g0278300 | - | Detail |
| C2H3g05174 | 3:8,278,011-8,280,761 | - | C1H3g03328 | CX3g030797 | LOC_Os03g17020 | Os03g0278400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |