| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g18683 | 2:2,752,084-2,753,516 | + | C2H2g30165 | CX2g019601 | LOC_Os02g06320 | Os02g0157900 | - | Detail |
| C1H2g18649 | 2:2,758,164-2,758,775 | - | C2H2g02446 | CX2g020045 | LOC_Os02g06330 | Os02g0797100 | - | Detail |
| C1H2g00672 | 2:2,761,025-2,765,009 | - | C2H2g01908 | CX2g023770 | LOC_Os02g06340 | Os02g0158100 | - | Detail |
| C1H2g05409 | 2:2,772,397-2,775,292 | + | C2H2g30204 | CX2g021965 | LOC_Os02g06360 | Os02g0158300 | - | Detail |
| C1H2g25229 | 2:2,775,842-2,779,921 | - | C2H2g13787 | CX2g019280 | LOC_Os02g06370 | Os02g0158400 | - | Detail |
| C1H2g22174 | 2:2,780,366-2,782,089 | - | C2H2g21849 | CX2g024324 | LOC_Os02g06380 | Os02g0158500 | - | Detail |
| C1H2g12950 | 2:2,783,544-2,786,144 | - | C2H2g30116 | CX2g024802 | LOC_Os02g06390 | Os02g0158600 | - | Detail |
| C1H2g02590 | 2:2,789,046-2,795,356 | + | C2H2g27732 | CX2g024891 | LOC_Os02g06400 | Os02g0158800 | - | Detail |
| C1H2g18829 | 2:2,795,988-2,797,883 | + | C2H2g18736 | CX2g019701 | LOC_Os02g06410 | Os02g0158900 | - | Detail |
| C1H2g22018 | 2:2,803,697-2,807,711 | + | C2H2g14387 | CX2g018968 | LOC_Os02g06430 | Os02g0159200 | - | Detail |
| C1H2g27396 | 2:2,808,743-2,809,900 | - | - | CX2g019775 | LOC_Os02g06440 | Os02g0159250 | - | Detail |
| C1H2g00263 | 2:2,809,876-2,810,486 | + | C2H2g28953 | CX2g022334 | LOC_Os02g06450 | Os02g0159300 | - | Detail |
| C1H2g18267 | 2:2,812,236-2,815,645 | - | C2H2g16780 | CX2g022827 | LOC_Os02g06460 | Os02g0159400 | - | Detail |
| C1H2g25877 | 2:2,817,508-2,818,758 | + | C2H2g17501 | CX2g019546 | LOC_Os02g06470 | Os02g0159800 | - | Detail |
| C1H2g17971 | 2:2,819,049-2,822,908 | - | C2H2g05611 | CX2g022624 | LOC_Os02g06480 | Os02g0159700 | - | Detail |
| C1H2g16132 | 2:2,824,188-2,827,427 | + | C2H2g25463 | CX2g019293 | LOC_Os02g06490 | Os02g0159900 | - | Detail |
| C1H2g04254 | 2:2,827,509-2,840,061 | - | C2H2g20195 | CX2g023293 | LOC_Os02g06500 | Os02g0160000 | - | Detail |
| C1H2g29331 | 2:2,845,817-2,847,473 | + | C2H2g24612 | CX2g022086 | LOC_Os02g06520 | Os02g0160200 | - | Detail |
| C1H2g21526 | 2:2,854,118-2,856,100 | + | - | CX2g019060 | LOC_Os02g06530 | Os02g0160250 | - | Detail |
| C1H2g01979 | 2:2,856,830-2,857,816 | + | C2H2g21039 | CX2g023885 | LOC_Os02g06540 | Os02g0160400 | OsSTP9 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |