| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g25199 | 2:2,506,545-2,507,600 | + | C2H2g14235 | CX2g020390 | LOC_Os02g05810 | Os02g0152200 | - | Detail |
| C1H2g05884 | 2:2,510,932-2,515,030 | + | C2H2g19146 | CX2g021034 | LOC_Os02g05820 | Os02g0152300 | - | Detail |
| C1H2g10224 | 2:2,516,112-2,517,091 | + | C2H2g26042 | CX2g020432 | LOC_Os02g05830 | Os02g0152400 | RbcS1, OsRBCS1, OsRbcS1 | Detail |
| C1H2g09085 | 2:2,516,702-2,523,352 | - | C2H2g00493 | CX2g024888 | LOC_Os02g05840 | Os02g0152500 | - | Detail |
| C1H2g06159 | 2:2,528,869-2,533,110 | - | C2H2g16173 | CX2g023661 | LOC_Os02g05870 | Os02g0152600 | - | Detail |
| C1H2g27785 | 2:2,534,095-2,547,538 | - | C2H2g26431 | CX2g019434 | LOC_Os02g05880 | Os02g0152700 | OsNRPE1, FEM3 | Detail |
| C1H2g20010 | 2:2,552,468-2,554,783 | - | C2H2g09396 | CX2g024806 | LOC_Os02g05890 | Os02g0152900 | YL1 | Detail |
| C1H2g04114 | 2:2,555,505-2,560,333 | + | C2H2g06285 | CX2g019870 | LOC_Os02g05900 | Os02g0153000 | - | Detail |
| C1H2g21236 | 2:2,562,198-2,569,463 | - | C2H2g06146 | CX2g019353 | LOC_Os02g05910 | Os02g0153200 | LRK7 | Detail |
| C1H2g03071 | 2:2,569,123-2,570,299 | + | C2H2g20879 | - | - | Os02g0153300 | - | Detail |
| C1H2g06175 | 2:2,574,064-2,583,080 | - | C2H2g23869 | CX2g023705 | LOC_Os02g05940 | Os02g0154200 | LRK1 | Detail |
| C1H2g07850 | 2:2,586,207-2,587,606 | + | - | - | - | Os02g0153600 | - | Detail |
| C1H2g01047 | 2:2,587,270-2,590,413 | - | C2H2g09417 | CX2g023705 | LOC_Os02g05950 | Os02g0153700 | LRK4 | Detail |
| C1H2g03803 | 2:2,588,781-2,589,411 | + | - | - | - | - | - | Detail |
| C1H2g11501 | 2:2,592,253-2,592,984 | - | C2H2g08281 | - | - | - | - | Detail |
| C1H2g12961 | 2:2,593,508-2,596,663 | - | C2H2g20625 | CX2g023705 | LOC_Os02g05960 | Os02g0153900 | LRK3 | Detail |
| C1H2g03512 | 2:2,600,343-2,606,518 | - | C2H2g12173 | CX2g023705 | LOC_Os02g05970 | Os02g0154000 | LRK2 | Detail |
| C1H2g17560 | 2:2,619,367-2,619,819 | + | - | - | - | - | - | Detail |
| C1H2g11534 | 2:2,620,151-2,623,297 | - | C2H2g23869 | CX2g023705 | LOC_Os02g05980 | Os02g0154200 | LRK1 | Detail |
| C1H2g19919 | 2:2,623,011-2,624,109 | + | C2H2g26528 | CX2g022343 | - | Os02g0154300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g22097 | 3:5,940,220-5,945,212 | - | C1H3g15751 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C2H3g16447 | 3:5,956,434-5,957,435 | - | C1H3g25563 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C2H3g04493 | 3:5,957,502-5,959,837 | - | - | - | - | - | - | Detail |
| C2H3g25355 | 3:5,960,351-5,962,670 | + | C1H3g16232 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C2H3g25205 | 3:5,965,054-5,965,302 | - | - | - | - | - | - | Detail |
| C2H3g13539 | 3:5,970,034-5,973,049 | + | C1H3g23512 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C2H3g13159 | 3:5,987,474-5,991,199 | - | C1H3g12564 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C2H3g13186 | 3:6,003,033-6,004,147 | - | C1H3g01094 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C2H3g28054 | 3:6,028,737-6,031,648 | - | C1H3g22208 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C2H3g29189 | 3:6,040,962-6,046,385 | - | C1H3g02835 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C2H3g27019 | 3:6,049,025-6,052,280 | - | C1H3g05308 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C2H3g25429 | 3:6,053,183-6,054,496 | - | C1H3g12624 | - | - | - | - | Detail |
| C2H3g29391 | 3:6,059,877-6,061,780 | - | - | CX7g046886 | - | - | - | Detail |
| C2H3g25845 | 3:6,071,181-6,074,667 | + | C1H3g02612 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C2H3g14412 | 3:6,075,970-6,076,299 | - | C1H3g04395 | CX3g025129 | - | - | - | Detail |
| C2H3g19351 | 3:6,078,157-6,083,535 | + | C1H3g30651 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C2H3g08152 | 3:6,114,153-6,115,543 | + | C1H3g20871 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C2H3g24795 | 3:6,130,139-6,132,527 | + | C1H3g09365 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C2H3g23260 | 3:6,135,105-6,138,218 | - | C1H3g15109 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C2H3g25882 | 3:6,139,191-6,144,359 | - | C1H3g26830 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |