| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g13478 | 12:21,801,869-21,804,684 | + | C2H12g29464 | CX12g015217 | LOC_Os12g43130 | Os12g0626400 | OsPSY2 | Detail |
| C1H12g12539 | 12:21,806,428-21,814,652 | + | C2H12g10388 | CX12g016973 | LOC_Os12g43120 | Os12g0626300 | - | Detail |
| C1H12g21734 | 12:21,816,973-21,817,350 | - | C2H12g07513 | CX12g018336 | LOC_Os12g43110 | Os12g0626200 | - | Detail |
| C1H12g05248 | 12:21,823,401-21,825,838 | + | C2H12g04489 | CX12g015621 | LOC_Os12g43100 | Os12g0626100 | - | Detail |
| C1H12g18708 | 12:21,826,301-21,827,565 | - | C2H12g15160 | CX12g016105 | LOC_Os12g43080 | - | - | Detail |
| C1H12g07880 | 12:21,831,457-21,834,918 | + | C2H12g27340 | CX12g015683 | LOC_Os12g43300 | Os12g0612625 | - | Detail |
| C1H12g22055 | 12:21,835,496-21,835,783 | + | C2H12g28418 | CX12g015346 | LOC_Os12g43300 | - | - | Detail |
| C1H12g11976 | 12:21,845,357-21,846,477 | - | C2H12g08225 | CX12g017695 | LOC_Os12g43340 | Os12g0628100 | - | Detail |
| C1H12g20248 | 12:21,852,855-21,853,853 | + | C2H12g26158 | CX12g016076 | LOC_Os12g43350 | Os12g0628300 | - | Detail |
| C1H12g26342 | 12:21,856,964-21,857,997 | - | - | CX12g016525 | - | - | - | Detail |
| C1H12g17443 | 12:21,859,811-21,863,182 | + | C2H12g10828 | CX12g016182 | LOC_Os12g43363 | Os12g0628400 | - | Detail |
| C1H12g27093 | 12:21,863,665-21,867,365 | + | C2H12g02542 | CX12g015409 | LOC_Os12g43370 | Os12g0628500 | - | Detail |
| C1H12g23762 | 12:21,870,350-21,870,886 | - | C2H12g15833 | CX12g016385 | LOC_Os12g43430 | Os12g0628600 | - | Detail |
| C1H12g10720 | 12:21,878,149-21,878,673 | - | C2H12g29563 | CX12g016385 | LOC_Os12g43390 | Os12g0629300 | - | Detail |
| C1H12g27773 | 12:21,915,167-21,915,691 | - | C2H12g29563 | CX12g016385 | LOC_Os12g43390 | Os12g0629300 | - | Detail |
| C1H12g08522 | 12:21,935,553-21,936,092 | - | C2H12g15833 | CX12g016385 | LOC_Os12g43380 | Os12g0629700 | - | Detail |
| C1H12g09686 | 12:21,942,030-21,942,578 | - | C2H12g04988 | CX12g016385 | LOC_Os12g43440 | Os12g0630100 | TOND1 | Detail |
| C1H12g27518 | 12:21,946,272-21,946,988 | + | C2H12g02025 | CX12g016385 | LOC_Os12g43450 | Os12g0630200 | - | Detail |
| C1H12g26617 | 12:21,950,178-21,950,954 | - | C2H12g07718 | CX12g016385 | LOC_Os12g43490 | Os12g0630500 | - | Detail |
| C1H12g31505 | 12:21,953,735-21,954,948 | - | C2H12g14169 | CX12g015757 | LOC_Os12g43500 | Os12g0278900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |