| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g20903 | 12:17,323,231-17,324,492 | - | C2H12g06426 | CX12g018330 | LOC_Os12g34854 | Os12g0533600 | - | Detail |
| C1H12g21671 | 12:17,328,626-17,333,389 | + | C2H12g08244 | CX12g016949 | LOC_Os12g34860 | Os12g0533700 | - | Detail |
| C1H12g15465 | 12:17,333,835-17,336,686 | - | C2H12g19325 | CX12g016573 | LOC_Os12g34870 | Os12g0533800 | - | Detail |
| C1H12g00880 | 12:17,337,746-17,342,625 | - | C2H12g05988 | CX12g016651 | LOC_Os12g34874 | Os12g0534000 | - | Detail |
| C1H12g20074 | 12:17,346,055-17,347,329 | - | C2H12g11234 | CX12g017851 | LOC_Os12g34880 | Os12g0534100 | - | Detail |
| C1H12g17228 | 12:17,348,435-17,351,022 | - | C2H12g08685 | CX12g016361 | LOC_Os12g34890 | Os12g0534200 | - | Detail |
| C1H12g06202 | 12:17,358,333-17,361,710 | + | C2H12g25724 | CX12g016513 | LOC_Os12g34920 | Os12g0534700 | - | Detail |
| C1H12g06216 | 12:17,364,509-17,365,658 | + | - | - | - | - | - | Detail |
| C1H12g00195 | 12:17,365,697-17,367,183 | + | C2H1g18311 | - | - | - | - | Detail |
| C1H12g12651 | 12:17,367,881-17,370,742 | + | C2H12g18227 | CX12g015705 | LOC_Os12g34970 | Os12g0535300 | - | Detail |
| C1H12g03484 | 12:17,372,677-17,374,695 | + | C2H12g26676 | CX12g016360 | LOC_Os12g35030 | Os12g0535900 | - | Detail |
| C1H12g29979 | 12:17,375,619-17,378,497 | - | C2H12g06817 | CX12g015687 | LOC_Os12g35040 | Os12g0536000 | TCM12, iPGAM | Detail |
| C1H12g12527 | 12:17,381,587-17,386,497 | + | C2H12g25374 | CX12g015274 | LOC_Os12g35060 | Os12g0536200 | - | Detail |
| C1H12g18294 | 12:17,387,048-17,387,763 | - | C2H12g20928 | CX12g016304 | LOC_Os12g35070 | Os12g0536300 | - | Detail |
| C1H12g20216 | 12:17,394,160-17,395,890 | - | C2H12g01442 | CX12g018295 | LOC_Os12g35270 | Os12g0538100 | - | Detail |
| C1H12g14258 | 12:17,398,548-17,404,927 | + | C2H12g08195 | CX12g016180 | LOC_Os12g35290 | Os12g0538300 | - | Detail |
| C1H12g00794 | 12:17,408,082-17,408,330 | - | - | - | - | - | - | Detail |
| C1H12g01248 | 12:17,417,075-17,420,578 | + | C2H12g18808 | CX12g016218 | LOC_Os12g35320 | Os12g0538500 | OsSDEL1, SDEL1 | Detail |
| C1H12g09399 | 12:17,439,106-17,439,417 | + | C2H12g22588 | CX12g016937 | LOC_Os12g35330 | Os12g0538600 | - | Detail |
| C1H12g25862 | 12:17,451,000-17,451,506 | - | C2H12g06405 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06471 | 1:38,256,733-38,261,732 | - | C1H1g31840 | CX1g001384 | - | - | - | Detail |
| C2H1g27116 | 1:38,263,067-38,266,738 | + | C1H1g26867 | CX1g001353 | LOC_Os01g74640 | Os01g0978000 | OsUCP1 | Detail |
| C2H1g18952 | 1:38,268,703-38,274,072 | - | C1H1g06588 | CX1g004874 | LOC_Os01g74650 | Os01g0978100 | - | Detail |
| C2H1g23413 | 1:38,280,940-38,281,923 | + | C1H1g16241 | CX1g002707 | LOC_Os01g74660 | Os01g0978400 | - | Detail |
| C2H10g06876 | 10:32,383-33,144 | + | C1H10g04037 | - | - | Os10g0100200 | - | Detail |
| C2H10g10175 | 10:33,557-46,360 | - | C1H10g10615 | CX10g007625 | LOC_Os10g01044 | Os10g0100300 | - | Detail |
| C2H10g03638 | 10:64,229-71,091 | + | C1H10g12715 | CX10g008235 | LOC_Os10g01060 | Os10g0100500 | - | Detail |
| C2H10g09829 | 10:129,958-131,890 | - | C1H12g03401 | - | - | - | - | Detail |
| C2H10g03040 | 10:149,381-150,322 | - | C1H10g01786 | CX10g009692 | LOC_Os10g01080 | Os10g0100700 | OsPDX1.2 | Detail |
| C2H10g29939 | 10:171,219-173,645 | + | C1H10g00834 | CX10g010378 | LOC_Os10g01100 | Os10g0101000 | SDRLK-44 | Detail |
| C2H10g13492 | 10:194,898-197,428 | - | C1H10g23663 | CX10g008057 | LOC_Os10g01110 | Os10g0101100 | - | Detail |
| C2H10g26137 | 10:210,919-218,007 | - | C1H10g17975 | CX10g009812 | LOC_Os10g01134 | Os10g0101200 | SCP45, OsSCP45, OsSCP46, SCP46 | Detail |
| C2H10g07312 | 10:240,492-240,941 | + | C1H2g03215 | CX2g024115 | - | - | - | Detail |
| C2H10g06494 | 10:294,697-295,758 | - | C1H10g10888 | CX10g010129 | LOC_Os10g01290 | Os10g0102400 | - | Detail |
| C2H10g14615 | 10:310,986-317,483 | + | C1H10g10334 | CX10g008814 | LOC_Os10g01380 | Os10g0102900 | - | Detail |
| C2H10g02203 | 10:330,405-333,453 | - | C1H10g06516 | CX10g010069 | LOC_Os10g06140 | Os10g0103140 | - | Detail |
| C2H10g20902 | 10:372,399-373,931 | - | C1H10g15181 | CX10g007797 | LOC_Os10g01470 | Os10g0103700 | - | Detail |
| C2H10g05016 | 10:390,083-395,962 | - | C1H10g21883 | CX10g008534 | LOC_Os10g01480 | Os10g0103800 | - | Detail |
| C2H10g23358 | 10:407,716-407,886 | - | C1H10g30809 | CX10g007465 | LOC_Os10g01500 | Os10g0104000 | - | Detail |
| C2H10g24023 | 10:421,458-422,739 | + | C1H10g15868 | CX10g010145 | LOC_Os10g01530 | Os10g0104300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |