| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g11684 | 12:15,843,491-15,847,251 | - | C2H12g27134 | CX12g015464 | LOC_Os12g30824 | Os12g0491800 | OsTPS21, OsKSL6 | Detail |
| C1H12g27496 | 12:15,907,717-15,909,834 | + | C2H12g07419 | CX12g015363 | LOC_Os12g30920 | Os12g0492900 | - | Detail |
| C1H12g02734 | 12:15,924,163-15,924,468 | - | C2H12g24982 | CX12g015747 | LOC_Os12g30960 | - | - | Detail |
| C1H12g24045 | 12:15,939,127-15,939,926 | - | C2H12g28730 | CX12g015611 | LOC_Os12g31040 | - | - | Detail |
| C1H12g11188 | 12:15,943,303-15,944,325 | - | C2H12g28730 | CX12g015611 | LOC_Os12g30990 | Os12g0492900 | - | Detail |
| C1H12g02587 | 12:15,948,084-15,950,642 | + | C2H12g23449 | CX12g018315 | LOC_Os12g31000 | Os12g0493900 | - | Detail |
| C1H12g20908 | 12:15,971,732-15,975,336 | - | - | - | - | - | - | Detail |
| C1H12g00470 | 12:16,016,561-16,017,252 | - | C2H12g24706 | - | - | - | - | Detail |
| C1H12g24169 | 12:16,045,742-16,047,586 | - | C2H12g15598 | CX12g015200 | LOC_Os12g31200 | Os12g0495800 | - | Detail |
| C1H12g08326 | 12:16,048,929-16,049,780 | - | C2H12g30578 | CX12g015200 | LOC_Os12g31200 | Os12g0495800 | - | Detail |
| C1H12g16592 | 12:16,087,359-16,089,042 | - | C2H12g13557 | CX12g017492 | LOC_Os12g31340 | Os12g0496700 | - | Detail |
| C1H12g06556 | 12:16,092,287-16,097,102 | - | C2H12g18907 | CX12g018401 | LOC_Os12g31350 | Os12g0496900 | - | Detail |
| C1H12g20250 | 12:16,102,608-16,105,261 | + | C2H12g06486 | CX12g016965 | LOC_Os12g31370 | Os12g0497300 | RAD51A2, OsRad51A2, OsRAD51 | Detail |
| C1H12g18512 | 12:16,106,291-16,109,038 | - | C2H12g02588 | CX12g016672 | LOC_Os12g31380 | Os12g0497400 | - | Detail |
| C1H12g16920 | 12:16,122,290-16,123,165 | - | C2H12g09359 | CX12g017498 | LOC_Os12g31410 | Os12g0152800 | - | Detail |
| C1H12g13420 | 12:16,132,241-16,136,155 | + | C2H12g24043 | CX12g017630 | LOC_Os12g31440 | Os12g0498300 | - | Detail |
| C1H12g13529 | 12:16,136,813-16,138,877 | - | C2H12g13092 | CX12g016991 | LOC_Os12g31450 | Os12g0498400 | - | Detail |
| C1H12g23620 | 12:16,141,393-16,143,978 | - | C2H12g25352 | CX12g015981 | LOC_Os12g31460 | Os12g0498500 | - | Detail |
| C1H12g10413 | 12:16,145,952-16,150,585 | + | C2H12g22204 | CX12g015344 | LOC_Os12g31470 | Os12g0498650 | - | Detail |
| C1H12g08178 | 12:16,154,384-16,157,365 | + | C2H12g15433 | CX12g016001 | LOC_Os12g31480 | Os12g0498700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g02971 | 9:12,505,290-12,505,617 | - | C1H9g17454 | - | - | - | - | Detail |
| C2H9g25855 | 9:12,524,610-12,528,304 | + | C1H9g06238 | CX9g056267 | LOC_Os09g24900 | Os09g0415700 | - | Detail |
| C2H9g19203 | 9:12,528,295-12,535,519 | - | C1H9g17729 | CX9g055233 | LOC_Os09g24910 | Os09g0415800 | - | Detail |
| C2H9g23439 | 9:12,547,815-12,553,400 | + | C1H9g31111 | CX9g054854 | LOC_Os09g24924 | Os09g0416200 | OsSTP26 | Detail |
| C2H9g14042 | 9:12,556,441-12,561,920 | + | C1H9g25465 | CX9g057507 | LOC_Os09g24954 | Os09g0416500 | - | Detail |
| C2H9g28029 | 9:12,583,951-12,587,363 | - | C1H9g22850 | CX9g057871 | LOC_Os09g24980 | Os09g0416700 | - | Detail |
| C2H9g01617 | 9:12,601,502-12,603,185 | + | C1H9g16627 | CX9g057704 | LOC_Os09g25000 | Os09g0416900 | - | Detail |
| C2H9g07186 | 9:12,623,389-12,626,461 | - | C1H9g10214 | CX9g055541 | LOC_Os09g25040 | Os09g0417400 | - | Detail |
| C2H9g17545 | 9:12,639,583-12,640,811 | - | C1H9g04471 | CX9g055243 | LOC_Os09g25060 | Os09g0417600 | WRKY76, OsWRKY76.3 | Detail |
| C2H9g29801 | 9:12,655,535-12,657,204 | - | C1H9g20232 | CX9g055795 | LOC_Os09g25070 | Os09g0417800 | WRKY62, OsWRKY62.2 | Detail |
| C2H9g03390 | 9:12,686,145-12,688,351 | - | - | CX9g058037 | - | Os09g0418375 | - | Detail |
| C2H9g16461 | 9:12,704,946-12,705,164 | - | - | - | - | - | - | Detail |
| C2H9g11990 | 9:12,725,163-12,728,112 | - | C1H9g10222 | CX9g057653 | LOC_Os09g25150 | Os09g0419200 | - | Detail |
| C2H9g18402 | 9:12,739,673-12,740,528 | - | C1H9g03561 | CX9g055071 | - | - | - | Detail |
| C2H9g00271 | 9:12,740,841-12,742,640 | + | C1H9g27951 | CX9g056568 | LOC_Os09g25190 | Os09g0419500 | - | Detail |
| C2H9g23762 | 9:12,746,624-12,747,700 | + | C1H9g23658 | CX9g056568 | LOC_Os09g25200 | Os09g0419600 | - | Detail |
| C2H9g25913 | 9:12,749,527-12,750,967 | + | C1H9g24531 | CX9g055694 | LOC_Os09g25220 | Os09g0420000 | - | Detail |
| C2H9g01801 | 9:12,751,370-12,754,803 | + | C1H9g05253 | CX9g055694 | LOC_Os09g25260 | Os09g0420100 | - | Detail |
| C2H9g28714 | 9:12,765,045-12,768,817 | - | C1H9g21007 | CX9g055351 | LOC_Os09g25290 | Os09g0420300 | - | Detail |
| C2H9g04494 | 9:12,773,585-12,776,390 | - | C1H9g28851 | CX9g056780 | LOC_Os09g25310 | Os09g0420600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |