| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g27186 | 12:8,027,831-8,030,743 | - | - | - | - | - | - | Detail |
| C1H12g22810 | 12:8,032,441-8,033,926 | - | C2H3g23130 | - | - | - | - | Detail |
| C1H12g30337 | 12:8,046,615-8,050,263 | + | C2H12g15577 | CX12g015656 | LOC_Os12g16620 | - | - | Detail |
| C1H12g12690 | 12:8,062,533-8,063,063 | + | C2H12g13804 | CX12g016493 | LOC_Os12g16640 | Os12g0267100 | - | Detail |
| C1H12g01774 | 12:8,065,294-8,065,512 | - | - | - | - | - | - | Detail |
| C1H12g04576 | 12:8,065,437-8,074,333 | + | C2H12g25263 | CX12g016493 | LOC_Os12g16650 | Os12g0267200 | - | Detail |
| C1H12g20271 | 12:8,081,573-8,081,926 | + | - | - | - | - | - | Detail |
| C1H12g26358 | 12:8,081,955-8,082,293 | + | C2H12g29205 | CX12g015504 | LOC_Os12g16670 | Os12g0267500 | - | Detail |
| C1H12g26040 | 12:8,086,905-8,092,004 | - | C2H5g06041 | CX9g058196 | LOC_Os10g29274 | Os10g0428200 | - | Detail |
| C1H12g24303 | 12:8,098,217-8,098,549 | + | C2H12g22341 | CX12g016418 | LOC_Os12g16370 | - | - | Detail |
| C1H12g20439 | 12:8,103,063-8,105,960 | + | C2H12g01086 | CX12g016003 | LOC_Os12g16690 | Os12g0267900 | - | Detail |
| C1H12g24834 | 12:8,116,448-8,118,408 | - | C2H12g04535 | CX12g018224 | LOC_Os12g16720 | Os12g0268000 | SL, OsSL, CYP71P1, LLM1, CYP71A1, T5H | Detail |
| C1H12g27646 | 12:8,194,063-8,199,131 | - | C2H12g04709 | CX12g016443 | LOC_Os12g17070 | - | - | Detail |
| C1H12g23758 | 12:8,214,290-8,217,091 | + | C2H12g27718 | CX12g015910 | LOC_Os12g17080 | Os12g0270200 | OGR1, ogr1 | Detail |
| C1H12g29906 | 12:8,219,778-8,221,352 | - | C2H12g03089 | CX12g018649 | LOC_Os12g17090 | Os12g0270300 | - | Detail |
| C1H12g00865 | 12:8,235,806-8,236,450 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17090 | Os12g0270675 | - | Detail |
| C1H12g14089 | 12:8,252,859-8,254,623 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17140 | Os12g0270675 | - | Detail |
| C1H12g01259 | 12:8,274,379-8,275,645 | - | - | - | - | - | - | Detail |
| C1H12g31898 | 12:8,277,268-8,279,819 | + | - | - | - | Os12g0231600 | - | Detail |
| C1H12g17449 | 12:8,295,784-8,297,542 | - | C2H12g14706 | CX12g017972 | LOC_Os12g17160 | Os12g0270900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g16494 | 5:2,395,316-2,397,937 | + | C1H5g12513 | CX5g040805 | LOC_Os05g05690 | Os05g0149500 | - | Detail |
| C2H5g25711 | 5:2,398,498-2,405,119 | - | C1H5g08311 | CX5g038928 | LOC_Os05g05700 | Os05g0149600 | OsCUL1-2 | Detail |
| C2H5g15844 | 5:2,410,866-2,416,815 | + | C1H5g22304 | CX5g038404 | LOC_Os05g05710 | Os05g0149800 | - | Detail |
| C2H5g18610 | 5:2,417,654-2,423,555 | + | C1H5g26443 | CX5g036871 | LOC_Os05g05720 | Os05g0149900 | - | Detail |
| C2H5g00389 | 5:2,427,101-2,427,911 | - | C1H5g12097 | CX5g037725 | - | - | - | Detail |
| C2H5g17068 | 5:2,429,760-2,432,603 | - | C1H5g19233 | CX5g039274 | LOC_Os05g05740 | Os05g0150000 | HTH5, PLPHP | Detail |
| C2H5g22435 | 5:2,436,046-2,445,994 | + | C1H5g21935 | CX5g036676 | LOC_Os05g05780 | Os05g0150300 | OsCHR727, CHR727 | Detail |
| C2H5g24081 | 5:2,446,403-2,450,978 | - | C1H5g05513 | CX5g040936 | LOC_Os05g05790 | Os05g0150400 | OsDRB3 | Detail |
| C2H5g02158 | 5:2,454,497-2,460,286 | - | C1H5g15222 | CX5g037178 | LOC_Os05g05800 | Os05g0150500 | TIR1, OsTIR1 | Detail |
| C2H5g00353 | 5:2,468,439-2,475,338 | - | C1H5g02062 | CX5g037551 | LOC_Os05g05810 | Os05g0150600 | OsRecQsim | Detail |
| C2H5g07952 | 5:2,478,110-2,480,103 | + | C1H5g14118 | CX5g037127 | LOC_Os05g05820 | Os05g0150733 | - | Detail |
| C2H5g03107 | 5:2,487,595-2,488,250 | + | C1H5g05063 | CX5g038863 | - | - | - | Detail |
| C2H5g01035 | 5:2,489,406-2,491,762 | + | C1H5g29614 | CX5g038779 | LOC_Os05g05830 | Os05g0150800 | - | Detail |
| C2H5g22602 | 5:2,491,846-2,495,963 | - | C1H5g12853 | CX5g040193 | LOC_Os05g05840 | Os05g0150900 | - | Detail |
| C2H5g00665 | 5:2,499,333-2,508,472 | - | C1H5g17386 | CX5g038309 | LOC_Os05g05860 | Os05g0151000 | - | Detail |
| C2H5g27389 | 5:2,510,435-2,511,543 | + | C1H5g18065 | CX5g039485 | LOC_Os05g05920 | Os05g0151100 | - | Detail |
| C2H5g27407 | 5:2,514,071-2,515,859 | - | C1H5g06297 | CX5g039472 | LOC_Os05g05940 | Os05g0151300 | - | Detail |
| C2H5g21053 | 5:2,516,863-2,521,275 | - | C1H5g06792 | CX5g040146 | LOC_Os05g05950 | Os05g0151400 | - | Detail |
| C2H5g20384 | 5:2,531,085-2,540,050 | + | C1H5g01718 | CX5g040030 | LOC_Os05g05980 | Os01g0530366 | - | Detail |
| C2H5g23909 | 5:2,558,237-2,558,773 | + | - | CX5g039592 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |