| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g27186 | 12:8,027,831-8,030,743 | - | - | - | - | - | - | Detail |
| C1H12g22810 | 12:8,032,441-8,033,926 | - | C2H3g23130 | - | - | - | - | Detail |
| C1H12g30337 | 12:8,046,615-8,050,263 | + | C2H12g15577 | CX12g015656 | LOC_Os12g16620 | - | - | Detail |
| C1H12g12690 | 12:8,062,533-8,063,063 | + | C2H12g13804 | CX12g016493 | LOC_Os12g16640 | Os12g0267100 | - | Detail |
| C1H12g01774 | 12:8,065,294-8,065,512 | - | - | - | - | - | - | Detail |
| C1H12g04576 | 12:8,065,437-8,074,333 | + | C2H12g25263 | CX12g016493 | LOC_Os12g16650 | Os12g0267200 | - | Detail |
| C1H12g20271 | 12:8,081,573-8,081,926 | + | - | - | - | - | - | Detail |
| C1H12g26358 | 12:8,081,955-8,082,293 | + | C2H12g29205 | CX12g015504 | LOC_Os12g16670 | Os12g0267500 | - | Detail |
| C1H12g26040 | 12:8,086,905-8,092,004 | - | C2H5g06041 | CX9g058196 | LOC_Os10g29274 | Os10g0428200 | - | Detail |
| C1H12g24303 | 12:8,098,217-8,098,549 | + | C2H12g22341 | CX12g016418 | LOC_Os12g16370 | - | - | Detail |
| C1H12g20439 | 12:8,103,063-8,105,960 | + | C2H12g01086 | CX12g016003 | LOC_Os12g16690 | Os12g0267900 | - | Detail |
| C1H12g24834 | 12:8,116,448-8,118,408 | - | C2H12g04535 | CX12g018224 | LOC_Os12g16720 | Os12g0268000 | SL, OsSL, CYP71P1, LLM1, CYP71A1, T5H | Detail |
| C1H12g27646 | 12:8,194,063-8,199,131 | - | C2H12g04709 | CX12g016443 | LOC_Os12g17070 | - | - | Detail |
| C1H12g23758 | 12:8,214,290-8,217,091 | + | C2H12g27718 | CX12g015910 | LOC_Os12g17080 | Os12g0270200 | OGR1, ogr1 | Detail |
| C1H12g29906 | 12:8,219,778-8,221,352 | - | C2H12g03089 | CX12g018649 | LOC_Os12g17090 | Os12g0270300 | - | Detail |
| C1H12g00865 | 12:8,235,806-8,236,450 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17090 | Os12g0270675 | - | Detail |
| C1H12g14089 | 12:8,252,859-8,254,623 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17140 | Os12g0270675 | - | Detail |
| C1H12g01259 | 12:8,274,379-8,275,645 | - | - | - | - | - | - | Detail |
| C1H12g31898 | 12:8,277,268-8,279,819 | + | - | - | - | Os12g0231600 | - | Detail |
| C1H12g17449 | 12:8,295,784-8,297,542 | - | C2H12g14706 | CX12g017972 | LOC_Os12g17160 | Os12g0270900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g11033 | 4:23,665,088-23,667,430 | - | C1H4g12131 | CX4g032840 | LOC_Os04g46320 | Os04g0548400 | - | Detail |
| C2H4g30491 | 4:23,670,654-23,671,898 | - | C1H2g19219 | CX4g032635 | LOC_Os04g46330 | Os04g0548500 | - | Detail |
| C2H4g19703 | 4:23,678,990-23,680,201 | - | C1H4g26382 | CX4g034670 | LOC_Os04g46350 | Os04g0548700 | - | Detail |
| C2H4g12477 | 4:23,690,645-23,694,074 | - | C1H4g18543 | CX4g032819 | LOC_Os04g46370 | Os04g0549300 | - | Detail |
| C2H4g23802 | 4:23,694,280-23,694,680 | + | C1H4g06939 | CX4g034583 | LOC_Os04g46380 | Os04g0549400 | - | Detail |
| C2H4g16012 | 4:23,698,059-23,699,921 | + | C1H4g13580 | CX4g033131 | LOC_Os04g46384 | Os04g0549500 | Os2R_MYB49 | Detail |
| C2H4g10744 | 4:23,700,634-23,705,138 | + | C1H4g09321 | CX4g031909 | LOC_Os04g46390 | Os04g0549600 | - | Detail |
| C2H4g11718 | 4:23,711,947-23,712,801 | + | C1H4g06177 | CX4g032343 | LOC_Os04g46400 | Os04g0549700 | OsAP2/ERF-40, OsTOC168 | Detail |
| C2H4g26941 | 4:23,717,907-23,718,638 | + | C1H4g06177 | CX4g034152 | LOC_Os04g46410 | Os04g0549800 | - | Detail |
| C2H4g00089 | 4:23,737,285-23,737,938 | + | C1H4g06177 | CX4g032904 | LOC_Os04g46440 | Os04g0550200 | OsERF34 | Detail |
| C2H4g18020 | 4:23,737,952-23,738,382 | - | C1H4g25073 | - | - | - | - | Detail |
| C2H4g27792 | 4:23,748,870-23,757,468 | - | C1H4g24190 | CX4g034813 | LOC_Os04g46450 | Os04g0550400 | OsHUB1, HUB1 | Detail |
| C2H4g02409 | 4:23,760,525-23,761,556 | + | - | CX4g032195 | LOC_Os04g46460 | Os04g0550500 | - | Detail |
| C2H4g04395 | 4:23,765,337-23,767,978 | + | C1H4g17634 | CX4g034240 | LOC_Os04g46470 | Os04g0550600 | HTD1, OsCCD7, D17 | Detail |
| C2H4g05787 | 4:23,768,309-23,770,201 | - | C1H4g11880 | CX4g034920 | LOC_Os04g46480 | Os04g0550700 | - | Detail |
| C2H4g01885 | 4:23,773,303-23,774,294 | - | C1H4g31862 | CX4g034128 | LOC_Os04g46490 | Os04g0550800 | - | Detail |
| C2H4g17694 | 4:23,774,764-23,775,695 | - | C1H4g15457 | CX4g034482 | LOC_Os04g46530 | Os04g0550900 | - | Detail |
| C2H4g01769 | 4:23,780,337-23,783,129 | + | C1H4g10662 | CX4g034419 | LOC_Os04g46560 | Os04g0551200 | OsMDH4.1 | Detail |
| C2H4g03635 | 4:23,784,093-23,787,452 | - | C1H4g21894 | CX4g035452 | LOC_Os04g46570 | Os04g0551300 | - | Detail |
| C2H4g26920 | 4:23,790,158-23,793,292 | + | C1H4g10694 | CX4g033814 | LOC_Os04g46580 | Os04g0551500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |