| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g20966 | 12:3,302,542-3,312,076 | + | C2H12g28594 | CX12g015598 | LOC_Os12g07300 | Os12g0170700 | - | Detail |
| C1H12g31083 | 12:3,315,836-3,318,161 | + | C2H12g30320 | CX12g018577 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g14333 | 12:3,324,765-3,325,004 | + | C2H12g06137 | CX12g017511 | LOC_Os12g07340 | Os12g0170800 | - | Detail |
| C1H12g02404 | 12:3,328,220-3,328,624 | + | C2H12g23442 | CX12g017511 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g08123 | 12:3,330,842-3,338,060 | + | C2H12g00108 | CX12g017364 | LOC_Os12g07350 | Os12g0171200 | - | Detail |
| C1H12g09894 | 12:3,358,893-3,359,354 | - | C2H8g28836 | CX12g017951 | - | - | - | Detail |
| C1H12g26803 | 12:3,388,120-3,388,792 | + | C2H12g24240 | CX12g016050 | LOC_Os12g07380 | Os12g0171600 | - | Detail |
| C1H12g22841 | 12:3,393,995-3,400,309 | - | C2H12g23734 | CX12g015255 | LOC_Os12g07450 | Os12g0172500 | - | Detail |
| C1H12g20718 | 12:3,445,465-3,446,739 | + | C2H12g19372 | CX12g016915 | LOC_Os12g07480 | Os12g0173300 | - | Detail |
| C1H12g19965 | 12:3,456,225-3,457,255 | + | C2H12g24516 | CX12g016817 | LOC_Os12g07490 | Os12g0173366 | - | Detail |
| C1H12g02920 | 12:3,459,345-3,461,996 | - | C2H12g30484 | CX12g016050 | LOC_Os12g07500 | Os12g0173400 | - | Detail |
| C1H12g26529 | 12:3,462,717-3,468,073 | + | C2H12g29759 | CX12g015915 | LOC_Os12g07530 | - | - | Detail |
| C1H12g02496 | 12:3,471,099-3,476,184 | + | C2H12g09225 | CX12g015330 | LOC_Os12g07540 | Os12g0174100 | - | Detail |
| C1H12g19045 | 12:3,492,580-3,493,308 | + | C2H12g07410 | CX12g017802 | - | Os12g0174300 | - | Detail |
| C1H12g09187 | 12:3,503,366-3,504,504 | + | C2H12g28346 | CX12g017402 | LOC_Os12g07580 | Os12g0174700 | - | Detail |
| C1H12g24191 | 12:3,506,423-3,511,311 | - | C2H12g00464 | CX12g015542 | LOC_Os12g07590 | Os12g0174800 | - | Detail |
| C1H12g21338 | 12:3,541,766-3,542,736 | + | C2H12g23569 | CX12g017649 | LOC_Os12g07640 | Os12g0175400 | Os2R_MYB94 | Detail |
| C1H12g22991 | 12:3,550,454-3,554,122 | - | C2H12g11252 | CX12g017726 | LOC_Os12g07650 | Os12g0175500 | - | Detail |
| C1H12g00864 | 12:3,554,864-3,555,190 | + | C2H12g28545 | CX12g015326 | LOC_Os08g06840 | - | - | Detail |
| C1H12g14489 | 12:3,556,678-3,556,994 | + | C2H12g13795 | - | - | Os12g0175600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g00833 | 3:6,156,874-6,159,740 | - | C1H3g13331 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C2H3g09594 | 3:6,162,907-6,164,923 | - | C1H3g17846 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| C2H3g04826 | 3:6,169,883-6,171,313 | - | C1H3g04613 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C2H3g04774 | 3:6,176,440-6,180,711 | - | C1H3g30000 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C2H3g26123 | 3:6,213,044-6,213,472 | + | C1H3g07150 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C2H3g04799 | 3:6,217,496-6,217,914 | - | C1H3g22613 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C2H3g26449 | 3:6,218,204-6,220,951 | + | C1H3g28102 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C2H3g15250 | 3:6,226,447-6,227,826 | - | C1H3g02271 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C2H3g13166 | 3:6,242,290-6,244,009 | - | C1H3g01497 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C2H3g05297 | 3:6,245,343-6,249,107 | - | C1H3g06697 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C2H3g03038 | 3:6,259,189-6,260,716 | + | C1H3g26874 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C2H3g18690 | 3:6,262,896-6,263,675 | - | C1H3g16800 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C2H3g14812 | 3:6,265,248-6,268,840 | - | C1H3g06079 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C2H3g23005 | 3:6,272,046-6,275,587 | + | C1H3g06632 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C2H3g09799 | 3:6,279,462-6,283,564 | + | C1H3g16553 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C2H3g00329 | 3:6,284,070-6,297,053 | - | - | - | - | - | - | Detail |
| C2H3g17247 | 3:6,299,016-6,299,858 | - | C1H3g27731 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C2H3g15076 | 3:6,302,555-6,307,791 | + | - | CX3g028989 | LOC_Os03g21310 | - | - | Detail |
| C2H3g00667 | 3:6,318,526-6,319,400 | + | C1H3g19664 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C2H3g02090 | 3:6,321,649-6,322,638 | + | C1H3g02151 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |