| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g03165 | 12:1,360,288-1,360,858 | - | C2H12g12992 | CX12g018471 | LOC_Os12g03540 | Os12g0129400 | - | Detail |
| C1H12g14356 | 12:1,375,895-1,376,203 | + | C2H12g26837 | - | - | - | - | Detail |
| C1H12g18819 | 12:1,376,295-1,376,501 | + | C2H12g25798 | - | - | - | - | Detail |
| C1H12g26172 | 12:1,376,636-1,376,971 | + | C2H12g21094 | CX12g016696 | LOC_Os12g06930 | - | - | Detail |
| C1H12g09635 | 12:1,397,115-1,402,343 | - | C2H12g15851 | CX12g017965 | LOC_Os12g03720 | Os12g0131150 | - | Detail |
| C1H12g19116 | 12:1,405,307-1,408,132 | + | C2H12g29504 | CX12g017842 | LOC_Os12g03730 | Os12g0131200 | - | Detail |
| C1H12g05970 | 12:1,408,673-1,409,306 | - | C2H12g21923 | CX12g016235 | LOC_Os11g03920 | Os12g0131266 | - | Detail |
| C1H12g16146 | 12:1,409,316-1,409,582 | - | C2H12g30346 | - | - | - | - | Detail |
| C1H12g22049 | 12:1,410,865-1,415,552 | - | C2H12g04882 | CX12g015993 | LOC_Os12g03790 | Os12g0131900 | - | Detail |
| C1H12g27375 | 12:1,426,768-1,431,870 | + | C2H12g26793 | CX12g015231 | LOC_Os12g03810 | Os12g0132200 | - | Detail |
| C1H12g17838 | 12:1,428,448-1,432,862 | - | C2H12g09084 | CX12g016449 | LOC_Os12g03816 | Os12g0132300 | OsCML3 | Detail |
| C1H12g18740 | 12:1,433,948-1,437,904 | - | C2H12g06878 | CX12g016015 | LOC_Os12g03822 | Os12g0132400 | OsRIP1 | Detail |
| C1H12g16357 | 12:1,438,837-1,439,218 | - | C2H12g15683 | CX12g015235 | - | - | - | Detail |
| C1H12g00495 | 12:1,442,784-1,448,368 | - | C2H12g06293 | CX12g016345 | LOC_Os11g04010 | Os12g0500800 | - | Detail |
| C1H12g09294 | 12:1,450,440-1,454,857 | - | C2H12g25753 | - | LOC_Os12g03830 | Os12g0132500 | - | Detail |
| C1H12g05342 | 12:1,459,029-1,463,614 | - | C2H12g10240 | - | LOC_Os12g03860 | Os12g0132800 | - | Detail |
| C1H12g05091 | 12:1,469,365-1,470,729 | + | C2H12g14231 | - | - | Os12g0132900 | - | Detail |
| C1H12g13868 | 12:1,470,627-1,476,361 | - | C2H12g02432 | - | LOC_Os12g03870 | Os12g0133000 | - | Detail |
| C1H12g01014 | 12:1,477,537-1,479,737 | - | C2H12g01792 | CX11g013375 | LOC_Os12g03880 | Os12g0133050 | OsP0C | Detail |
| C1H12g17796 | 12:1,487,917-1,495,408 | - | C2H12g17288 | - | LOC_Os12g03899 | Os12g0133100 | OsVMT, OsZIFL12, OsVMT/OsZIFL12 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01497 | 3:28,972,883-28,975,723 | - | C1H3g24709 | CX3g025964 | LOC_Os03g55640 | Os03g0765200 | - | Detail |
| C2H3g05267 | 3:28,982,740-28,986,255 | - | C1H3g19260 | CX3g030762 | LOC_Os03g55660 | Os03g0765400 | - | Detail |
| C2H3g21899 | 3:28,986,987-28,987,280 | - | C1H3g01103 | CX3g030135 | LOC_Os03g55670 | Os03g0765500 | - | Detail |
| C2H3g10178 | 3:28,987,334-28,988,943 | - | C1H3g21398 | CX3g030135 | LOC_Os03g55670 | - | - | Detail |
| C2H3g20680 | 3:28,990,039-28,991,037 | - | C1H3g25450 | CX3g030205 | LOC_Os03g55680 | Os03g0765500 | - | Detail |
| C2H3g07544 | 3:29,009,628-29,018,821 | - | C1H3g10434 | CX3g026492 | LOC_Os03g55734 | Os03g0766200 | - | Detail |
| C2H3g01139 | 3:29,028,646-29,033,920 | + | C1H3g28511 | CX3g026186 | LOC_Os03g55760 | Os03g0766500 | - | Detail |
| C2H3g02791 | 3:29,037,838-29,040,041 | + | C1H3g11551 | CX3g026597 | LOC_Os03g55784 | Os03g0766900 | - | Detail |
| C2H3g02036 | 3:29,052,567-29,055,644 | - | C1H3g16165 | CX3g026749 | LOC_Os03g55820 | Os03g0767500 | - | Detail |
| C2H3g17261 | 3:29,059,102-29,060,639 | + | C1H3g20103 | - | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C2H3g25481 | 3:29,061,049-29,062,991 | + | C1H3g10730 | CX3g027804 | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C2H3g21501 | 3:29,065,629-29,068,055 | + | C1H3g31861 | CX3g028593 | LOC_Os03g55850 | Os03g0767800 | - | Detail |
| C2H3g01498 | 3:29,068,999-29,069,879 | + | C1H3g14127 | CX3g024946 | LOC_Os03g55870 | Os03g0767900 | - | Detail |
| C2H3g08266 | 3:29,077,859-29,082,044 | - | C1H3g26336 | CX3g028693 | LOC_Os03g55890 | Os03g0769000 | - | Detail |
| C2H3g19989 | 3:29,089,478-29,094,215 | - | C1H3g24628 | CX3g027389 | LOC_Os03g55920 | Os03g0769050 | - | Detail |
| C2H3g27533 | 3:29,095,145-29,096,650 | - | C1H3g25789 | CX3g028168 | LOC_Os03g55930 | Os03g0769100 | - | Detail |
| C2H3g12948 | 3:29,103,982-29,107,722 | + | C1H3g19145 | CX3g028504 | LOC_Os03g55950 | Os03g0769400 | - | Detail |
| C2H3g22257 | 3:29,110,512-29,113,327 | - | C1H3g25186 | CX3g028565 | LOC_Os03g55970 | Os03g0769600 | - | Detail |
| C2H3g01939 | 3:29,130,743-29,131,300 | + | C1H3g09664 | CX3g028075 | LOC_Os03g56010 | Os03g0770000 | - | Detail |
| C2H3g30222 | 3:29,133,381-29,138,555 | + | C1H3g17718 | CX3g030368 | LOC_Os03g56020 | Os03g0826400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |