| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g22368 | 12:1,028,749-1,031,754 | + | C2H12g30295 | CX12g017662 | LOC_Os12g02980 | Os12g0123500 | OsAPY9 | Detail |
| C1H12g05221 | 12:1,035,004-1,040,764 | + | C2H12g23996 | CX12g017662 | LOC_Os12g02980 | Os12g0123500 | OsAPY9 | Detail |
| C1H12g25659 | 12:1,058,143-1,059,669 | + | C2H12g09367 | CX12g016621 | LOC_Os12g03040 | Os12g0123700 | NAC131, ONAC131 | Detail |
| C1H12g22976 | 12:1,083,130-1,087,111 | - | C2H12g07694 | CX12g015401 | LOC_Os12g03060 | Os12g0123900 | - | Detail |
| C1H12g25682 | 12:1,088,173-1,089,447 | + | C2H11g13818 | CX12g017754 | LOC_Os12g03070 | Os12g0124000 | - | Detail |
| C1H12g19027 | 12:1,096,395-1,099,481 | - | C2H12g12920 | CX12g015071 | LOC_Os12g03100 | Os12g0124400 | - | Detail |
| C1H12g21501 | 12:1,123,964-1,124,993 | - | C2H12g28075 | CX12g017678 | LOC_Os12g03150 | Os12g0125000 | OsMYB60 | Detail |
| C1H12g26200 | 12:1,135,004-1,135,948 | - | C2H12g12728 | CX12g016071 | LOC_Os12g03180 | Os12g0125300 | - | Detail |
| C1H12g16810 | 12:1,136,434-1,139,886 | - | C2H12g04503 | CX12g016045 | LOC_Os12g03190 | Os12g0125400 | - | Detail |
| C1H12g02357 | 12:1,140,404-1,145,638 | - | C2H12g11583 | CX12g016734 | LOC_Os12g03200 | Os12g0125800 | - | Detail |
| C1H12g15575 | 12:1,149,772-1,151,284 | - | C2H12g17589 | CX12g016478 | LOC_Os12g03260 | Os12g0126000 | - | Detail |
| C1H12g11610 | 12:1,160,761-1,165,060 | - | C2H12g07942 | CX12g015633 | LOC_Os12g03260 | Os12g0126000 | - | Detail |
| C1H12g08527 | 12:1,172,058-1,172,980 | - | C2H12g24280 | CX12g016190 | LOC_Os11g03520 | Os12g0126100 | OsGELP115 | Detail |
| C1H12g20982 | 12:1,173,981-1,176,323 | + | C2H12g24293 | CX12g016754 | LOC_Os12g03270 | Os12g0126200 | - | Detail |
| C1H12g18779 | 12:1,177,125-1,181,632 | - | C2H12g23067 | CX12g016808 | LOC_Os12g03290 | Os12g0126300 | OsWRI1-2 | Detail |
| C1H12g15178 | 12:1,184,769-1,187,985 | - | C2H11g10212 | CX12g016429 | LOC_Os12g03320 | Os11g0129800 | - | Detail |
| C1H12g22481 | 12:1,195,103-1,203,372 | - | C2H12g22101 | CX12g017029 | LOC_Os12g03340 | Os12g0126800 | - | Detail |
| C1H12g17482 | 12:1,204,631-1,205,526 | - | C2H12g00758 | CX12g017256 | LOC_Os12g03350 | Os11g0130200 | - | Detail |
| C1H12g09048 | 12:1,206,742-1,208,484 | + | C2H12g11621 | CX12g018353 | LOC_Os12g03360 | Os12g0127100 | - | Detail |
| C1H12g09150 | 12:1,217,148-1,218,644 | - | C2H12g17222 | CX11g011497 | LOC_Os12g03390 | Os12g0127400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18815 | 2:22,964,531-22,973,156 | - | C1H2g02429 | CX2g019377 | LOC_Os02g40460 | Os02g0617700 | - | Detail |
| C2H2g29974 | 2:22,984,697-22,984,957 | - | - | - | - | - | - | Detail |
| C2H2g26929 | 2:22,988,593-22,990,462 | + | C1H2g22582 | - | LOC_Os02g40490 | - | - | Detail |
| C2H2g04756 | 2:22,994,675-22,996,352 | + | C1H2g02238 | CX2g024840 | LOC_Os02g40500 | Os02g0618100 | OsGRX9, OsGrx_C2.1 | Detail |
| C2H2g05107 | 2:22,997,619-23,000,421 | + | C1H2g04978 | CX2g024264 | LOC_Os02g40510 | Os02g0618200 | OsPRR1, OsTOC1, OsPRR1/OsTOC1 | Detail |
| C2H2g25708 | 2:23,002,033-23,003,523 | - | C1H2g16546 | - | LOC_Os02g40514 | Os02g0618250 | - | Detail |
| C2H2g01262 | 2:23,008,365-23,009,939 | - | C1H2g01139 | CX2g019264 | LOC_Os02g40530 | Os02g0618400 | OsMPS | Detail |
| C2H2g01838 | 2:23,025,294-23,026,795 | + | C1H2g19268 | CX2g024894 | LOC_Os02g40550 | Os02g0618700 | - | Detail |
| C2H2g30582 | 2:23,043,425-23,044,159 | - | - | - | LOC_Os02g40600 | - | - | Detail |
| C2H2g02169 | 2:23,070,406-23,075,582 | - | C1H2g16057 | CX2g023988 | LOC_Os02g40664 | Os02g0619600 | - | Detail |
| C2H2g26987 | 2:23,075,966-23,077,800 | + | C1H2g04094 | - | - | - | - | Detail |
| C2H2g19869 | 2:23,080,364-23,080,630 | - | - | - | - | - | - | Detail |
| C2H2g18142 | 2:23,088,767-23,092,303 | + | C1H2g31349 | CX2g019895 | LOC_Os02g40680 | Os02g0620100 | - | Detail |
| C2H2g10513 | 2:23,093,099-23,093,482 | + | C1H2g31349 | CX2g020219 | LOC_Os02g40690 | Os02g0620200 | - | Detail |
| C2H2g22522 | 2:23,099,083-23,099,503 | + | C1H2g24265 | CX2g023588 | LOC_Os02g40700 | Os02g0620400 | - | Detail |
| C2H2g07540 | 2:23,105,722-23,107,218 | + | C1H2g23096 | CX2g024155 | LOC_Os02g40710 | Os02g0620500 | OsAMT1;3 | Detail |
| C2H2g29061 | 2:23,111,389-23,115,393 | + | C1H2g17359 | CX2g024932 | LOC_Os02g40730 | Os02g0620600 | AMT1;2, OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1, 3", OsAMT1;3, OsAMT1.3, OsAMT1.2 | Detail |
| C2H2g23641 | 2:23,118,462-23,120,057 | - | C1H2g17305 | CX2g024918 | LOC_Os02g40750 | Os02g0769900 | - | Detail |
| C2H2g07915 | 2:23,128,520-23,133,173 | - | - | - | - | - | - | Detail |
| C2H2g25432 | 2:23,136,851-23,144,033 | + | C1H2g09682 | CX2g022252 | LOC_Os02g40770 | Os02g0621100 | SDG712 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |