| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g04603 | 1:5,989,600-5,994,298 | - | C2H1g00939 | - | - | - | - | Detail |
| C1H1g10595 | 1:6,040,587-6,043,241 | - | C2H1g17446 | CX1g003329 | LOC_Os01g12460 | Os01g0224200 | - | Detail |
| C1H1g28759 | 1:6,043,736-6,045,126 | + | C2H1g06705 | CX1g007058 | LOC_Os01g12464 | Os01g0224300 | - | Detail |
| C1H1g07004 | 1:6,046,920-6,049,789 | + | C2H1g14688 | CX1g001394 | LOC_Os01g12470 | Os01g0224400 | - | Detail |
| C1H1g12177 | 1:6,051,552-6,053,195 | - | C2H1g11914 | CX1g003539 | LOC_Os01g12480 | Os01g0224500 | - | Detail |
| C1H1g07815 | 1:6,068,874-6,071,925 | + | C2H1g03625 | CX1g002397 | LOC_Os01g12490 | Os01g0224700 | YUCCA4, OsYUCCA4, OsYUC4, YUC4 | Detail |
| C1H1g11599 | 1:6,093,803-6,095,860 | - | C2H1g01358 | CX1g005063 | LOC_Os01g12520 | Os01g0225000 | - | Detail |
| C1H1g06137 | 1:6,103,875-6,111,085 | + | C2H1g06869 | CX1g001955 | LOC_Os01g12530 | Os01g0225100 | - | Detail |
| C1H1g01658 | 1:6,112,431-6,119,238 | + | C2H1g08071 | CX1g004081 | LOC_Os01g12540 | Os01g0225200 | - | Detail |
| C1H1g10876 | 1:6,119,514-6,123,943 | + | C2H1g21338 | CX1g000643 | LOC_Os01g12550 | Os01g0225300 | - | Detail |
| C1H1g09440 | 1:6,125,263-6,127,401 | - | C2H1g20462 | CX1g000722 | LOC_Os01g12560 | Os01g0225400 | - | Detail |
| C1H1g18546 | 1:6,128,365-6,130,365 | - | C2H1g08221 | CX1g001058 | LOC_Os01g12570 | Os01g0225500 | - | Detail |
| C1H1g06023 | 1:6,184,979-6,187,554 | + | C2H1g26314 | CX1g004850 | LOC_Os01g12650 | Os01g0226300 | - | Detail |
| C1H1g23194 | 1:6,188,433-6,193,837 | - | C2H1g13868 | CX1g002355 | LOC_Os01g12660 | Os01g0226400 | - | Detail |
| C1H1g24866 | 1:6,196,677-6,202,642 | + | C2H1g02547 | CX1g000068 | LOC_Os01g12670 | Os01g0226500 | - | Detail |
| C1H1g15047 | 1:6,208,060-6,210,523 | + | C2H1g29977 | CX1g004471 | LOC_Os01g12680 | Os01g0226600 | - | Detail |
| C1H1g31834 | 1:6,225,761-6,226,951 | + | C2H1g09030 | CX1g004458 | LOC_Os01g12690 | Os01g0226700 | - | Detail |
| C1H1g16770 | 1:6,242,041-6,248,766 | + | C2H1g01170 | CX1g003495 | LOC_Os01g12710 | Os01g0227100 | - | Detail |
| C1H1g09261 | 1:6,249,653-6,250,603 | + | C2H1g01170 | CX1g003495 | LOC_Os01g15700 | Os01g0527900 | - | Detail |
| C1H1g17285 | 1:6,261,105-6,265,913 | + | C2H1g13949 | CX1g000717 | LOC_Os01g12720 | Os01g0227200 | OsPERK1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g23607 | 3:16,137,145-16,137,691 | + | C1H3g03549 | CX3g026843 | LOC_Os03g31150 | Os03g0425000 | - | Detail |
| C2H3g24777 | 3:16,139,530-16,139,857 | - | C1H3g06307 | CX3g028435 | LOC_Os02g58170 | Os03g0563400 | - | Detail |
| C2H3g29625 | 3:16,142,020-16,143,062 | + | C1H3g03536 | - | - | - | - | Detail |
| C2H3g29941 | 3:16,143,940-16,145,359 | + | C1H3g15507 | CX9g057750 | LOC_Os03g31090 | Os03g0424500 | - | Detail |
| C2H3g02070 | 3:16,148,792-16,152,137 | + | C1H3g06288 | CX3g026843 | LOC_Os03g31150 | Os03g0425000 | - | Detail |
| C2H3g13373 | 3:16,152,706-16,155,867 | - | C1H3g23569 | CX3g026358 | LOC_Os03g31170 | Os03g0425200 | - | Detail |
| C2H3g29562 | 3:16,167,058-16,172,876 | + | C1H3g07104 | CX3g025115 | LOC_Os03g31180 | Os03g0425300 | - | Detail |
| C2H3g24938 | 3:16,178,346-16,180,250 | + | C1H3g07332 | CX3g030946 | LOC_Os03g31210 | Os03g0425600 | - | Detail |
| C2H3g12524 | 3:16,198,271-16,201,931 | + | C1H3g20426 | CX3g025387 | LOC_Os03g31230 | Os03g0425800 | - | Detail |
| C2H3g01389 | 3:16,219,189-16,223,952 | - | C1H3g22127 | CX3g029401 | LOC_Os03g31260 | Os03g0426300 | - | Detail |
| C2H3g18833 | 3:16,239,408-16,239,608 | + | C1H3g16780 | CX3g025661 | LOC_Os03g31290 | Os03g0426800 | - | Detail |
| C2H3g26583 | 3:16,247,699-16,254,421 | + | C1H3g17321 | CX3g031265 | LOC_Os03g31300 | Os03g0426900 | - | Detail |
| C2H3g22373 | 3:16,281,252-16,282,125 | + | C1H3g18318 | CX3g030459 | LOC_Os03g31360 | Os03g0427300 | - | Detail |
| C2H3g09016 | 3:16,282,166-16,282,937 | + | C1H3g18318 | CX3g030459 | LOC_Os03g31360 | Os03g0427300 | - | Detail |
| C2H3g13790 | 3:16,285,724-16,292,834 | + | C1H3g10283 | CX3g031010 | LOC_Os03g31400 | Os03g0427900 | - | Detail |
| C2H3g14816 | 3:16,293,880-16,297,409 | - | C1H3g31158 | CX3g026162 | LOC_Os03g31430 | Os03g0347900 | - | Detail |
| C2H3g18509 | 3:16,297,518-16,298,891 | - | C1H3g31158 | CX3g026162 | LOC_Os03g31430 | Os03g0428200 | - | Detail |
| C2H3g21714 | 3:16,305,845-16,307,476 | - | C1H3g31158 | - | - | Os03g0428200 | - | Detail |
| C2H3g17080 | 3:16,311,662-16,314,940 | - | C1H8g17324 | - | LOC_Os03g04150 | - | - | Detail |
| C2H3g05528 | 3:16,362,675-16,365,594 | + | C1H3g02780 | CX3g027331 | LOC_Os03g31490 | Os03g0428800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |